BAC Information

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BAC

Clone NameMSMg01-423B16
Chromosome16 (Build37)
Map Location 30,682,658 - 30,683,026
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623
Downstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B16.T7 (MSMg01no423_b16.b1)MSMg01-423B16.TJ (MSMg01no423_b16.g1)
ACCAG517338AG517339
length743755
length of high quality
(start - end)
377 (32 - 408)---
definitionCHROMAT_FILE: MSMg01no423_b16.b1 PHD_FILE: MSMg01no423_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:42 2005CHROMAT_FILE: MSMg01no423_b16.g1 PHD_FILE: MSMg01no423_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACATTTCGGAGAGGATCCGCGGAATTCTTGATTT
CGCTTTCTTCAGTGATGGACTATAGATGAGGAAGTCTAAGCTCAATAAAG
CGTTTTCTCCCCAACTTGCTTCTTGGTCGTGGTGTTTCATCACAGCAATA
GAAAGCCTAACTAAGATGCAGGGGGAAGCCCTGAATCAGCCAGGTCTGGC
CCAGATCAGCTGATCTGCCCAGCTGAGCCCAGCTCAATTCTTTGAATTGC
CAGTTCAAAGAAGGGTGAGCTACAGAGATGGCTATTGAAGGCATTCCAAG
CACTTTATTTGCTGCAGGAACAAGCCCAGATCTGAGGGACCCAGGGATAG
CTGTTCTGGGATGCGAGGGTTACTTGCATGTGGAAATTATTGTGAATGGA
GCACAGCCAACAGTAGCTTGCAAAGTATGGCCATGGTTTTCACTCTCTTC
CCTCAAGAGGTAAAATCTTTAAACAGCTCAGTAAGGCTAAGCAAACGAAA
GCCTGGATTTGAGAATGGCCATAGGACTTGCTTTGAACCAATGAACGTAA
GTCGATGCCATTGTATTGTTAACCTACAAAATTTTGCCCCCATTTTAGAG
TATTTTCACTTGGTGCTTTCGAGACGTTAGCTGCCCTATTTTTCTTACCA
TTTTACCTTTCTTCCTTCCCTCCTTCAAACCCACTTTTTCCCCCTGCCTC
CTTTTTCTTTACTTTACTTGCTTCTTTTTTTCTCCTGCTATTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTAATGTGCTTTAAATCGGGCCTGCAAGCTTACTTG
GTTGTCTCTCTATTGGTAATGGGAGACCCCAGCACGCTGGACTTCTGCAA
AATAAAACACTCTGTGTGTTTGCATACTATTTGAGTCTGGGGTGTCATAT
TTCATGGACCCTTACAAATAGGTCCCAGGGGAAGGTGTCACAAAGCTGCT
TGCAGCCATGCACTTGCCTCGGTGACCAGTATCATGTCCAGTCCACAGTA
TGGTATTATGTTGCTCTCACTGACCATCAAGTAGCATTGTATCAAAGGTA
TGTGGCATAGAGGCTTTGTCGTCGAGGGTCCATTGTTATCAAAGATGGAC
AGATCCCGACACCTCACAATAGTGGCTGTCTATTCCCTATACTTGTTCAG
TGCCCAGTTACTATATAAGGACTTTTTGCAAAGAGCTGTTAAGGATAGTT
CTTTAGGTAGTCTTATAAGCCTTTGAATAACCTCTCCCACTGACTTGTAT
TTAGAAACTTCTTTTTACTACCCAATCACCTGTCCTTTCCTTTTTCTCCC
CTTACCCCTTTTTTTTTTCCCCTTTCTCATTTGTTTTCCCCCTTTCTCTT
CTTTTTTCTCCCCCCCTCTTTTTTTCCCCCCTCTGTTATTTTCCCCCCCC
TCCCCTTTCTTTCCTTCCCTTCTTCCCCTCCTTTATATTACCCCCCCCCT
TCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b16.b1 MSMg01no423_b16.b1 CHROMAT_FILE:
MSMg01no423_b16.b1 PHD_FILE: MSMg01no423_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:42 2005
         (377 letters)



>mm_chr16_30682452_30683228
          Length = 777

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/369 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttgatttcgctttcttcagtgatggactatagatgaggaagtctaagctcaata 66
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgacctggctttcttcagtgatggactatagatgaggaagtctaagctcaata 266

                                                                       
Query: 67  aagcgttttctccccaacttgcttcttggtcgtggtgtttcatcacagcaatagaaagcc 126
           ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 267 aagtgttttctccccaacttgcttcttggtcctggtgcttcatcacagcaataggaagcc 326

                                                                       
Query: 127 taactaagatgcagggggaagccctgaatcagccaggtctggcccagatcagctgatctg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taactaagatgcagggggaagccctgaatcagccaggtctggcccagatcagctgatctg 386

                                                                       
Query: 187 cccagctgagcccagctcaattctttgaattgccagttcaaagaagggtgagctacagag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cccagctgagcccagctcaattctttgaattgccagttcaaagaagggtgagctacagag 446

                                                                       
Query: 247 atggctattgaaggcattccaagcactttatttgctgcaggaacaagcccagatctgagg 306
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 atggctattgaaggcattccaagcactttaattgctgcaggaacaagcccagatctgagg 506

                                                                       
Query: 307 gacccagggatagctgttctgggatgcgagggttacttgcatgtggaaattattgtgaat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gacccagggatagctgttctgggatgcgagggttacttgcatgtggaaattattgtgaat 566

                    
Query: 367 ggagcacag 375
           |||||||||
Sbjct: 567 ggagcacag 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)