BAC Information

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BAC

Clone NameMSMg01-423B23
Chromosome16 (Build37)
Map Location 82,486,581 - 82,487,185
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260, EG545172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B23.T7 (MSMg01no423_b23.b1)MSMg01-423B23.TJ (MSMg01no423_b23.g1)
ACCAG517352AG517353
length785758
length of high quality
(start - end)
---605 (60 - 664)
definitionCHROMAT_FILE: MSMg01no423_b23.b1 PHD_FILE: MSMg01no423_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:43 2005CHROMAT_FILE: MSMg01no423_b23.g1 PHD_FILE: MSMg01no423_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACGACTCCTATTTTCAGAGATCCGCGNAATCACTGACAGTACCTCCATT
ATTCCTGTTTATATCAACTAGCTTCTGACCTNATTATTAGCTGTAGTATA
AGGATGATGTGCGNTATATCGTCTAGACTTAATGNAAAGTTTAATCGCGN
NNCCGTTNCGGTGATAGCCCGGAGTTTTTTACCTAAAAGGTGGTGGTGGT
TAAAGCCTTTTCTTANNNACCAAGGGGCCTTAGTTCCCACCAAAAGGGGA
AAAAGAAATGGGGGGCCCAAAATTGAAAAAACCCCCCCCGGCCCCCCCCA
AGGACCCCGACATAAAAGGGGAGGAAATTTGGAAAATCTCTAAATTTTTC
AAAATTTTTGGGAAATATTTGGCGCCCCGGGAAAACTCCCCCCCAGGGGG
GATTCTCTCTTTTTTCACCACCACCCCCGCCCCCCCACAAAAAGGGGTGG
TAAAAAAAAACCCCCCCCTATTTTTTCTCCCTCCCCCAAAAACCCCCCTT
CTAAAAAAAAATTTTTTTAACCACAAATTTTCCCGTGGTTNTGCACCCCC
CCCCCTCCTTTTTTTTTTCCACAATTTTTTTTTTTCTTCTTTCAAAAAAT
NNTNTCTTCCCNNCCATTTNTCCTTTATACCTTATACCAGGATAAATTCC
TCTTTNTTCTTCTTTTCACCTTNTCCCCTCCCCCCCCCCCNTTTTTTTNN
NNTACCCCTCNTTTCTTTTTTTTTCTTTTTTCCTTTTTTCTCCTTTAAAC
AATTTTTCCTTTTCTTCTACCCCGAGAGAAGGGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATTATCAAGACAGAATATGTAATGTATTACTAGAGAATTTT
ATTTAAAACAGCTATGCTATATGACTTTTTTTAATGCAGATTTCATTTTA
GATATTGTCTTAATTGAGGTTTCATTGCTGTGAAGAGACACTATGACCAA
GGCAACTCATATAAAGTACACCATTTAATTGGGTCTGACTTACAGGTTCA
GTGGTGCAGTCCATTATCAATCATAGCAGGAAGGATGGTAGTGTTCAGGC
AGGCAGACATAGCCCTAGAGAAGCTGAGAGCTCTACATCTTGTTTGAAGG
TAAACAGGAGAATACTGTCTCCCACATGGCTAGGAAGAGGATATCAAAGC
CCACCTCCCACAGTGATACACTTCCTCCAACAAGGTCACACCTACTCCAA
CACCTAATAGTGCCATTCCCTGGGCCAAGCATATTCAAACATCCCCAGTT
ATGTATACTTTATTATTGACAAAATTACCTTCCATTGTTAATACTAGTCT
GTTCTCTTTAAAACCGTGCCTCTTCAACTTCATGATCATTACTGGCACAG
ATTTTAATAATATAAATTATCCGGTTTTCCCTCTTTGACTCTGCTTCTAT
CTGTAATTTCTCTGTTTTGGTTCCCAAGTATACAAAAAAAATCCAAATTT
TCATTCATTTCAGTAGGTTTCATAGCACATAGACTTCAGCACAATTTACC
TTAAGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b23.g1 MSMg01no423_b23.g1 CHROMAT_FILE:
MSMg01no423_b23.g1 PHD_FILE: MSMg01no423_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:43 2005
         (605 letters)



>mm_chr16_82486381_82487385
          Length = 1005

 Score = 1139 bits (589), Expect = 0.0
 Identities = 601/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatcaagacagaatatgtaatgtattactagagaattttatttaaaacagctatgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatcaagacagaatatgtaatgtattactagagaattttatttaaaacagctatgcta 260

                                                                       
Query: 61  tatgactttttttaatgcagatttcattttagatattgtcttaattgaggtttcattgct 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgactttttttagtgcagatttcattttagatattgtcttaattgaggtttcattgct 320

                                                                       
Query: 121 gtgaagagacactatgaccaaggcaactcatataaagtacaccatttaattgggtctgac 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gtgaagagacactatgaccaaggcaactaatataaagtacaccatttaattgggtctgac 380

                                                                       
Query: 181 ttacaggttcagtggtgcagtccattatcaatcatagcaggaaggatggtagtgttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacaggttcagtggtgcagtccattatcaatcatagcaggaaggatggtagtgttcagg 440

                                                                       
Query: 241 caggcagacatagccctagagaagctgagagctctacatcttgtttgaaggtaaacagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggcagacatagccctagagaagctgagagctctacatcttgtttgaaggtaaacagga 500

                                                                       
Query: 301 gaatactgtctcccacatggctaggaagaggatatcaaagcccacctcccacagtgatac 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gaatactgtctcccacatggctaggaagaggatatcaaagcccaccccccacagtgatac 560

                                                                       
Query: 361 acttcctccaacaaggtcacacctactccaacacctaatagtgccattccctgggccaag 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcctccaacaaggtcacaactactccaacacctaatagtgccattccctgggccaag 620

                                                                       
Query: 421 catattcaaacatccccagttatgtatactttattattgacaaaattaccttccattgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catattcaaacatccccagttatgtatactttattattgacaaaattaccttccattgtt 680

                                                                       
Query: 481 aatactagtctgttctctttaaaaccgtgcctcttcaacttcatgatcattactggcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatactagtctgttctctttaaaaccgtgcctcttcaacttcatgatcattactggcaca 740

                                                                       
Query: 541 gattttaataatataaattatccggttttccctctttgactctgcttctatctgtaattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattttaataatataaattatccggttttccctctttgactctgcttctatctgtaattt 800

                
Query: 601 ctctg 605
           |||||
Sbjct: 801 ctctg 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)