Query= MSMg01no423_f16.b1 MSMg01no423_f16.b1 CHROMAT_FILE:
MSMg01no423_f16.b1 PHD_FILE: MSMg01no423_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:01 2005
(428 letters)
>mm_chr16_23716459_23717287
Length = 829
Score = 687 bits (355), Expect = 0.0
Identities = 412/439 (93%), Gaps = 16/439 (3%)
Strand = Plus / Minus
Query: 1 tcccaggtgtt-----aaagacttggctgttagtctgtggcattgctggaaagtggtggg 55
||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct: 645 tcccaggtgttaaaaaaaagtcttggctgtcagtctgtggcgttgctggaaagtggtggg 586
Query: 56 acccttaagaggtggagtccagtaggaagaagataggttattggcagatcagacttttaa 115
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 585 acctttaagaggtggagtccagtaggaagaagataggttattggca-atcagacttttaa 527
Query: 116 gggatatcggatcactacacacccttcctttcatcctggccacctagaggaaagcagacc 175
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gggatattggatcactgcacacccttcctttcatcctggccacctagaggaaagcagacc 467
Query: 176 tccttcctttatcgtgtactgtcatgatatacaatgacatcgtacagtctcatacaagca 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 466 ----tcctttatcgtgtactgtcatgatatacaatgacatagtacagtctcatacaagca 411
Query: 236 gttccaagtaaccaggatctgaaagcttagaactagtgaaacaaaataaacccttgcatg 295
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 410 gttccaagtaaccaggaactgaaagcttagaactagtgagacaaaataaaccgttgcatg 351
Query: 296 tttgaagttgacttatcttgactcttttgttatctgtacagaaagcag------acaaac 349
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 350 tttgaagttgacttatcttgactcttttgttatctgtacagaaagcagacagttacaaac 291
Query: 350 cttataaatcttaaaatgcaaatgagtggatactaagttattagcgggctaagaaaagct 409
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 290 cttataaatcttaaaatgcaaatgagtggatattaagttattagcgggctaagaaaagct 231
Query: 410 caatcttatcatcattgtg 428
|||||||||||||||||||
Sbjct: 230 caatcttatcatcattgtg 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_f16.g1 MSMg01no423_f16.g1 CHROMAT_FILE:
MSMg01no423_f16.g1 PHD_FILE: MSMg01no423_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:01 2005
(472 letters)
>mm_chr16_23562115_23562983
Length = 869
Score = 654 bits (338), Expect = 0.0
Identities = 425/472 (90%), Gaps = 41/472 (8%)
Strand = Plus / Plus
Query: 1 ttagagtctaagacttagactaaaagaatatatgtgtgtgagtacacacacacacacaca 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 239 ttagagtctaagacttagactaaaagagtatatgtgtgtgagtacacacacacacacaca 298
Query: 61 gagagagagagagagagagacagagagaggagagacagagacagaaagagagacagagag 120
| |||||||||||||| ||||||| ||||| |||| |||||| ||||||
Sbjct: 299 cacagagagagagagag----agagaga-gagag--agag------agagag--agagag 343
Query: 121 aaagagagagagagagagagagagagagagacagacagagagagagagagagagagagac 180
||||||||| |||||||||||| ||| ||||||||| ||| | ||||||||
Sbjct: 344 aaagagagacagagagagagag-----gag--agacagagacaga-----a-agagagac 390
Query: 181 agagagagagagagagacagagagacagagagagagagagagagagacagagagagagac 240
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct: 391 agagagagagagag----agagag--agagagagagagagagagag--agagagagag-- 440
Query: 241 agagagagagagagagagaagagaggtcaactctagagaaaaatcttgggaaaatgagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagagagagagagagagaagagaggtcaactctagagaaaaatcttgggaaaatgagga 500
Query: 301 gaaaacaatttaaaagcatctgcaaagaaaacttcaggaggtttcatctctaacgacaat 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gaaaacaatttaaaagcatctgcaaagaaaacttcagg---tttcatctctaacgacaat 557
Query: 361 gagttacgggcttctggcagtcagtaacagagaccagagacaatgaagtaatagccacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagttacgggcttctggcagtcagtaacagagaccagagacaatgaagtaatagccacca 617
Query: 421 ttctgagctaacccacagggtcgatgaattggaaggtcaaaaagagtgcact 472
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 618 ttctgagctaacccacagggtcgctgaattggaaggtcaaaaagagtgcact 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 347
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 869
Length adjustment: 10
Effective length of query: 462
Effective length of database: 859
Effective search space: 396858
Effective search space used: 396858
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
