BAC Information

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BAC

Clone NameMSMg01-423G06
Chromosome16 (Build37)
Map Location 49,038,647 - 49,039,141
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik
Downstream geneMyh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423G06.T7 (MSMg01no423_g06.b1)MSMg01-423G06.TJ (MSMg01no423_g06.g1)
ACCAG517558AG517559
length782736
length of high quality
(start - end)
254 (56 - 309)498 (65 - 562)
definitionCHROMAT_FILE: MSMg01no423_g06.b1 PHD_FILE: MSMg01no423_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:04 2005CHROMAT_FILE: MSMg01no423_g06.g1 PHD_FILE: MSMg01no423_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCCAGGCT
CTGCGCTACCTAGGGCATTGGTGAAGGCCAGGAAGCAAAGTTTGATTTTG
CTTAGGTATTTGGCAAGGTATTGCTTGGAGGCACCTATAATAAAACAATA
CTGAAAGAAAGCACACAGATCCATTCGCAAGGACAAGTTTGGAGCATTCG
TTATACGAGATGCCACGGTTCCAGTAGACTAAGTTTCGGTGAAACTCTGC
TTCAGGACTGCTTCCAGGTTTCTAAGCCTGTCATACCAGTCACTACTGGA
ATGGATGTATTTTATTAGTAGGTGTTTATGATCATTATGTACATGTATAA
AATTATAAATAATAAATAAAATGCTTTTAAAAATATGATCTATTCTTAAT
GTGTACATGTAAAGAGATGAGAAAACCCAGCCTCTGGGAGTAAAACTAAT
TCTACTTTTTCTAGATCGTAGAATCTTGATCACATACTTTTACCCTATTA
GCCTAATTTCCTTTTAAGAATCTTATTGTTGTAGCCACGGCGGTTACACC
TCCTTTATCCTCCTACTTCTTGCAGTACTAATCTCGTCTTATTTTTTTAT
TTCCCTTCCCCCCCTCGGTTCCCCCATTTGAGATTCCTTTTAAGTCCCCT
TTTTCCTTCCCTTACCTCTTCTTTTTCCCCCATTAATTTTATCCTCCCCC
CCCCCTCCCTTTTTCATCTATCTTCTCTTCTCCCCATTTTTTACACCCCT
TTCTCTCCCATTTCCCCTCTTTTCTTACCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACAGTAGCCAAGGAATCAAAACAATCTAAATGTCCT
AAAATAGATGAAAAGATAGTGAAGATGTACATATTCAACAATGGAATAGT
ATTCACCTATTTATACAAACAAACAAAGAAGAAAACTTCACCCCAATATG
GGTGATGACTCATGTAATCTGGAAACCTAGAACACTCTGCACAACTTGCA
GGCAGGTCAAGAGGTTGGTCTTTCAGTAGCAGTACCTACTATGTACAAAA
TCTTGAAGAGTGTTTTATCTCTTAAATATTCCGATATCTTGAGATTTGTG
AGCTATTTTCTTCCTAAGTCCTAAGGAGCCTCCCACCAGAACTTTCAGAA
ACTTAGGGTGCTGTGGTCCAGGATGGAATATTGTAGTTCAGAGGAAATTT
CTATAAAATGTATACCTACTATCTTCCCACATAGAGCCCCAGCTCTTGCA
TGTTTGTGACTTTGCAAAGTACCCAGGTCTTTTAGGAAAAATACTCCTTA
CTCTGTCTTCATACATTTTACAATGGATAGCCTTTTCAAAAAGTGATAGG
AAACTTGCATATTCCCTTGCACACAAATGAAAAGTACACATGCATTCCCC
ATATTTGCTTATCCAACCCCTTCTCCTATCTATCCAAACCTATTTTTCCC
AACTTTTTCAATGAGTTAACGCTATTCTTTAGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_g06.g1 MSMg01no423_g06.g1 CHROMAT_FILE:
MSMg01no423_g06.g1 PHD_FILE: MSMg01no423_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:04 2005
         (498 letters)



>mm_chr16_49038243_49039141
          Length = 899

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/499 (97%), Gaps = 9/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   tagccaaggaatcaaaacaatctaaatgtcctaaaatagatgaaaagatagtgaagatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tagccaaggaatcaaaacaatctaaatgtcctaaaatagatgaaaagatagtgaagatgt 840

                                                                       
Query: 65  acatattcaacaatggaatagtattcacctatttatacaaacaaacaaagaagaaaactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 acatattcaacaatggaatagtattcacctatttatacaaacaaacaaagaagaaaactt 780

                                                                       
Query: 125 caccccaatatgggtgatgactcatgtaatctggaaacctagaacactctgcacaacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 caccccaatatgggtgatgactcatgtaatctggaaacctagaacactctgcacaacttg 720

                                                                       
Query: 185 caggcaggtcaagaggttggtctttcagtagcagtacctactatgtacaaaatcttgaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 caggcaggtcaagaggttggtctttcagtagcagtacctactatgtacaaaatcttgaag 660

                                                                       
Query: 245 agt----gttttatctcttaaatatt-ccgatatcttgagatttgtgagctattttcttc 299
           |||    |    ||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 659 agtgaggg----atctcttaaatattagcgatatcttgagatttgtgagctattttcttc 604

                                                                       
Query: 300 ctaagtcctaaggagcctcccaccagaactttcagaaacttagggtgctgtggtccagga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctaagtcctaaggagcctcccaccagaactttcagaaacttagggtgctgtggtccagga 544

                                                                       
Query: 360 tggaatattgtagttcagaggaaatttctataaaatgtatacctactatcttcccacata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tggaatattgtagttcagaggaaatttctataaaatgtatacctactatcttcccacata 484

                                                                       
Query: 420 gagccccagctcttgcatgtttgtgactttgcaaagtacccaggtcttttaggaaaaata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagccccagctcttgcatgtttgtgactttgcaaagtacccaggtcttttaggaaaaata 424

                              
Query: 480 ctccttactctgtcttcat 498
           |||||||||||||||||||
Sbjct: 423 ctccttactctgtcttcat 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space:   433832
Effective search space used:   433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)