BAC Information

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BAC

Clone NameMSMg01-423I15
Chromosome16 (Build37)
Map Location 61,213,837 - 61,214,179
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I15.T7 (MSMg01no423_i15.b1)MSMg01-423I15.TJ (MSMg01no423_i15.g1)
ACCAG517671AG517672
length832730
length of high quality
(start - end)
264 (30 - 293)408 (63 - 470)
definitionCHROMAT_FILE: MSMg01no423_i15.b1 PHD_FILE: MSMg01no423_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:15 2005CHROMAT_FILE: MSMg01no423_i15.g1 PHD_FILE: MSMg01no423_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTTTCAGAAGAGGATCCGCGGAATTCTTATTTT
TCGTGATGACTGAAAGGAGGATGGGAACAAAAAAAAAGTGGGGGGGGGGG
ATGAGAGGTAATCCCAGACTCTACCTCACACTTGCAGGCAAGGAAGAGAA
CACCAATCCAGAATTCAGGGTCCCATATGCTTTCTGATAATATCCAGGGG
GAACAAAATAGAGGCCTCCTCACAAAATTGGTCCTGGTCATGAGTCTTAA
CCTTGAGATCATACATAACCAGAAGGGTTTTCAACACCCCAAGTCGGGAT
CTCGTTTTTTTAAAGAGGGAAGGGAACCCCCTTTTGGGAAAGGGGTTGGG
AAACAAATGGACNTACAATAGGGTGGACGGCGGATCTTCTCATTAGTAGC
CCGTCCTGTCCTGTGGAAGATACAAGGCTGTGCCTTGCCGGAGACTCCGA
AGAAAGATCAGACCCCCGCCTTGGTGTTTTCTTCTCCTCCCTCCCCCCCT
AGGTTCTTTTCTGGGGAATAAACCCCCCGCTCCTCTCCGCTGTTGTTGTT
TTCTCCAGGGGGATAAAACAATAAAAAATAAAAAACCCCTCCCCCCTTCC
TTTCCTCTCTCCNTNTCCTTTCTATTTTAACTCCCCCTTTATATCTACTT
CTTATCTTCATATATGTTTTTGCCACCTGAAAATCTCCCAATTCCGCTGC
GTGGTAATAACTTCCTTTACCATAACCTCTTTCTACCATCCCCTCTCTTG
TTCAATAACCCCTTATTTCCATCCCACCCTCGTATATCTCGATTCCCTCC
CCGGCCGCATCTATATCCTACTTCACCCACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCCTAATGTACTTTAAATGGGGCCTGTGAGCAGTTGGG
CAGGGACTGCAGCATGCTGGACTTCTGCAGAATAAAACACTCTTTGCCTT
TACATAGAATTTGAACCCAGGGTACTATTCTTCAGTGAATCCTGGACCCT
TACATTTGGTGGCTATTTTGGGGATTTGCTGGAGACTCCCTGACCCAATT
AGTTAAGTGTTTTTGGTAATTCCGGGTACACAGTTGTCTTTTGTCTTGTC
CATCTCTGTGTTTCTGTTATGGGTTTAATCTGCATTTCTCTTTCGGGTTT
AATCTCAAGGTAGAGAGGGACAAAGCTGATTCATATTTTGTCACCTGGCC
AGGAGCAATGGACGATGCTGCTGACCGTCTACCAGAAGCAGGAGAACTTG
CTAGTTCTTATCTGAATTGTGAATGTGCTGTGGGTCTATGGGCTTCCCAT
GCACAAAGAGGAAAACCATATGAGATAGCATTTTAGTTTTGTTTTTATTC
TCTCTGGAATGTCCTTATGTGTCTCTGTGCATGTATTCATTTTGTGCATC
TTATCTGCTTGTACAATTTTTTTTTTTGATTCCTAGAATGGGGCAGGCTC
ATAGCACTACCCTGGGGTTGTGCCTGAATCATTTTAAGGACTTTTGCTGC
GCCACAGATGACTCTTTCCGCTTGTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i15.g1 MSMg01no423_i15.g1 CHROMAT_FILE:
MSMg01no423_i15.g1 PHD_FILE: MSMg01no423_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:15 2005
         (408 letters)



>mm_chr16_61213571_61214379
          Length = 809

 Score =  186 bits (96), Expect = 3e-51
 Identities = 293/378 (77%), Gaps = 52/378 (13%)
 Strand = Plus / Plus

                                                                       
Query: 48  cagcatgctggacttctgcagaataaaacactctttgcctttacataga--atttgaacc 105
           |||||||||  ||||||| | ||||||||||||||||| |||||| | |  |||||| | 
Sbjct: 267 cagcatgctatacttctgtacaataaaacactctttgcatttaca-a-actatttgagca 324

                                                                       
Query: 106 cagggtact--attcttcagtgaatcctggacccttacatttggtggctattttggggat 163
            |||||  |  ||||||| ||||||| |||||||||||||||||             || 
Sbjct: 325 gagggt--ttcattcttctgtgaatcatggacccttacatttgg-------------ga- 368

                                                                       
Query: 164 ttgctggagactccctgacccaat-tagttaagtgtttttggtaattccg---ggt-aca 218
             ||||||||| ||||||| |||| ||||  |||||||||       ||    ||| || 
Sbjct: 369 --gctggagaccccctgactcaatatagtgcagtgttttt-------ccaaaaggtgac- 418

                                                                       
Query: 219 cagttgtcttttgtcttgtccatctctgtgtttctgttatgggtttaatctgcattt-ct 277
           |||||||||||||||||||||||||||||||||||||| || ||||||||| | ||| ||
Sbjct: 419 cagttgtcttttgtcttgtccatctctgtgtttctgttttgagtttaatct-ctttttct 477

                                                                       
Query: 278 ctttcgggtttaatctcaagg-tagagagggacaaagctgattca----tattttgtcac 332
            |||  |||| |||||  ||| | |||||||||||||| ||  ||    |||||||||||
Sbjct: 478 gtttaaggttcaatctggaggct-gagagggacaaagcaga--cacacgtattttgtcac 534

                                                                       
Query: 333 ctggccaggagcaatggacgatgctgct-gaccgtctaccagaagca-ggagaacttgct 390
           ||||||||| ||||  || || ||| || |||| ||||  ||||||| ||| ||||||||
Sbjct: 535 ctggccaggggcaacagaggaagct-ctagacc-tctagtagaagcaagga-aacttgct 591

                             
Query: 391 agttcttatctgaattgt 408
           |||||| |||||||||||
Sbjct: 592 agttctcatctgaattgt 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)