Query= MSMg01no423_p16.b1 MSMg01no423_p16.b1 CHROMAT_FILE:
MSMg01no423_p16.b1 PHD_FILE: MSMg01no423_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:48 2005
(384 letters)
>mm_chr16_30278960_30279742
Length = 783
Score = 688 bits (356), Expect = 0.0
Identities = 374/380 (98%), Gaps = 1/380 (0%)
Strand = Plus / Minus
Query: 5 gaattccatctgtgcttagcctctctgacctcacttctctttgactgtgccccaaggagc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gaattccatctgtgtttagcctctctgacctcacttctctttgactgtgccccaaggagc 524
Query: 65 agccaagatggggacagtcctaggtgggagtggggaggcagtaccaagcctggcctctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agccaagatggggacagtcctaggtgggagtggggaggcagtaccaagcctggcctctct 464
Query: 125 tgggtggcctggggtccatctcacttgagaagaggccttgcttaggaagccattcttgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgggtggcctggggtccatctcacttgagaagaggccttgcttaggaagccattcttgga 404
Query: 185 gtgtcacaggtatgggggggagatcttgtttgagggtcttagttctctcagatgcactgg 244
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 403 gtgtcacaggtat-ggggggagatcttctttgagggtcttagttctctcagatgcactgg 345
Query: 245 gaagggcaggagaggccatttaagctcctcgtttcttggtctgtgtgaagatagagcgat 304
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 344 gaagggcaggagaggccatttaagctcctcgggtcttggtctgtgtgaagatagaacgat 285
Query: 305 taactcatgggatttccctgccagggaaacgttttaagcaagcaggcttgaggaagtgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taactcatgggatttccctgccagggaaacgttttaagcaagcaggcttgaggaagtgtg 225
Query: 365 gttttcaagccttggcgtgc 384
||||||||||||||||||||
Sbjct: 224 gttttcaagccttggcgtgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 783
Length adjustment: 9
Effective length of query: 375
Effective length of database: 774
Effective search space: 290250
Effective search space used: 290250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_p16.g1 MSMg01no423_p16.g1 CHROMAT_FILE:
MSMg01no423_p16.g1 PHD_FILE: MSMg01no423_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:48 2005
(521 letters)
>mm_chr16_30111770_30112690
Length = 921
Score = 853 bits (441), Expect = 0.0
Identities = 506/543 (93%), Gaps = 27/543 (4%)
Strand = Plus / Plus
Query: 1 cttctcttttcctgaccggtgacatgtctatatctcccaaatcatcttttgaagtagaca 60
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttctctcttcctgaccggtgacgtgtctatatctcccaaatcatctttggaagtagaca 260
Query: 61 gaatggaactactacacatataagaaatctacttgctttccagctgaaaatacataggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatggaactactacacatataagaaatctacttgctttccagctgaaaatacataggac 320
Query: 121 aaagctagtcagtattggtaaataacaatgattgttcctctccagacccacttctgttta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aaagctagtcagtattggtaaataacaatgattgttcctctccagacccacttccgttta 380
Query: 181 ccttgcctatttctttttttttaaa----gatttatttatttatttattcatttta-tat 235
||||||||||||||||||||||||| |||||||||||||||||||| || | |
Sbjct: 381 ccttgcctatttctttttttttaaaaaaagatttatttatttatttatt-----tagtgt 435
Query: 236 atgtgagtacactgtagctgtacagatggttgtgagccttcatatggttgttaggaattg 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgtgagtacactgtagctgtacagatggttgtgagccttcatatggttgttaggaatta 495
Query: 296 aatttttaggacctctgctctctcccgttggcccactcactcagtcccttgctt------ 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aatttttaggacctctgctctctcccgttggcccactcactcagtcccttgcttgctccg 555
Query: 350 -----------tatttattattatacataagtacactgtagctgacttcagacacaccag 398
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acccaaagatttatttattattatacataagtacactgtagctgacttcagacacaccag 615
Query: 399 aagggggcgtcagatctcattaggggtggtttctgggatttgaactcagggccttctgta 458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 616 aagggggcgtcagatctcattaggggtggttgctgggatttgaactcagggccttctgta 675
Query: 459 agaacagtcagtgctgttacccgctgagccatcttcccagcccccgccttgtctatttca 518
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 676 agaacagtcagtgctgttatccgctgagccatcttgccagcccctgccttgtctatttca 735
Query: 519 aag 521
|||
Sbjct: 736 aag 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
