BAC Information

Click to search

BAC

Clone NameMSMg01-424D02
Chromosome16 (Build37)
Map Location 38,460,982 - 38,461,449
singlet/doubletsinglet
Overlap geneCd80
Upstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh
Downstream geneLOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D02.T7 (MSMg01no424_d02.b1)MSMg01-424D02.TJ (MSMg01no424_d02.g1)
ACCAG518171AG518172
length737748
length of high quality
(start - end)
273 (43 - 315)518 (80 - 597)
definitionCHROMAT_FILE: MSMg01no424_d02.b1 PHD_FILE: MSMg01no424_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:05 2005CHROMAT_FILE: MSMg01no424_d02.g1 PHD_FILE: MSMg01no424_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCTCTGTTTTTCGACACCTGAACTGAGAAAATTGAGATTGGCCCATAG
GCAAATCTGTGGAGCATTTTCTTCATTAATGACTAATATGGAAGGGCCCA
GTCCGTGGTAGGTAGTGCCACCCTTGGTTCTAGGTTGTGTAAGAAAAGCA
AGCAAAGAAGAACAAGCCAGAATGCAGTATTCCTCCAGTGATTCTGCTTC
AGTTCTTATCTTCTTTATACCTTTATATCTCTGCCTGACTTCTCTTCATA
ATGAACTGTCTTGGGCATGTTTGCTGAATAAAACTTCCCTTTCTCAAATT
GCTTTTGGCCATGATGTTCTATCTATCACAGCAGTAGAAAGCTTCTCCTT
CTCAACTTCCTAAATATGTTGGGGCCCACAGATCACTGCTTACTGTCAAC
CTCAGCTGTTGAATCTTTTTGCAGTGAGTGGCGGTTACTTTAGAGATTCA
TAACCATTCACACTACTGATAGCTGGTGCTACTGCTTGGTGACCCAATGC
TTATATGCCAATGAAAGAAAATAATCAGATATACACATTATCCATTCCAC
GAATCAGAGAACTTTTCAGAGTGGGGAAGAATGTAAGAGCTGAAGGAAGG
GGGTCGTCTGAACTGAAACAGTTTCTCTACCTGGATATAGGAGGTAGATT
TACCACACTTGGGAAGGTCATGAAATTACAAGTTGCA
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTTACAAAGAACAAGCC
ACACAGCTTCAATGTAGCCCAACTGGCAAAGTGCTTGCCCAGAATGTAAG
AAACCCTTGGGTTTGATCTGTAATACTGCACAAACTGGGCATGGTAGTAG
ATGTCTAGAATCCTAGTATTTAGGAGGTAGAGGCAGGAGGATCAAAAGTT
CAAAGTCATCCTTCGTTACCTAGTGAGTAAGGGTAGCTAGCCTAGGCTAC
ATGAGACCCTGTCAGTCTGATACTTTTTTCCCGAATCCTCCATTGCCATC
TGCCTCCGTCAGGTCTTCTCCTCCAACCCCCCTACTCCCTCCTTTCTCAG
ATCCTCAGTGTCAGTAATCAGGACCCCCTTATTCTTGAGGGGTTAGCTGC
AGGACTTACATGAGCAAACTTGTTTGAGGACACGAATCTCAGGACCCCCT
TATTTCTTGAGGGGTTAGCTGCAGGACTTACATAAGCAAACTTGTTTGAG
GACACGAATCTCATGCTCAACTAACCTCTGAGATAGGTGGACATTCAAAG
CTAAGATATTCATAGACTATTTTTTGACTCATAGCATAAAGAACCGGGCA
TAGCCATAGCACACAGTACTTTTCCTGATGGCTAAAAATGTATCACTTTG
GCCTAATTCTTACCAATTTTTCTGGTGCAATGCTTTTAATTTGCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d02.g1 MSMg01no424_d02.g1 CHROMAT_FILE:
MSMg01no424_d02.g1 PHD_FILE: MSMg01no424_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:05 2005
         (518 letters)



>mm_chr16_38460532_38461449
          Length = 918

 Score =  839 bits (434), Expect = 0.0
 Identities = 459/474 (96%), Gaps = 12/474 (2%)
 Strand = Plus / Minus

                                                                       
Query: 51  agtgcttgcccagaatgtaagaaacccttgggtttgatctgtaatactgcacaaactggg 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 agtgcttgcccagaatgtaagaaacccttgggtttgatctgtaatactgcacaaactggg 859

                                                                       
Query: 111 catggtagtagatgtctagaatcctagtatttaggaggtagaggcaggaggatcaaaagt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 catggtagtagatgtctagaatcctagtatttaggaggtagaggcaggaggatcaaaagt 799

                                                                       
Query: 171 tcaaagtcatccttcgttacctagtgagtaagggtagctagcctaggctacatgagaccc 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcaaagtcatccttcgttacctagtgagtaagggtagctagcctaggctacatgagaccc 739

                                                                       
Query: 231 tgtcagtctgata------cttttttcccgaatcctccattgccatctgcctccgtcagg 284
           |||||||||||||      |      ||||||||||||||||||||||||||||||||||
Sbjct: 738 tgtcagtctgatacccgccc------cccgaatcctccattgccatctgcctccgtcagg 685

                                                                       
Query: 285 tcttctcctccaacccccctactccctcctttctcagatcctcagtgtcagtaatcagga 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcttctcctccaacccccctactccctcctttctcagatcctcagtgtcagtaatcagga 625

                                                                       
Query: 345 cccccttattcttgaggggttagctgcaggacttacatgagcaaacttgtttgaggacac 404
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 cccctttattcttgaggggttagctgcaggacttacataagcaaacttgtttgaggacac 565

                                                                       
Query: 405 gaatctcaggacccccttatttcttgaggggttagctgcaggacttacataagcaaactt 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaatctcaggacccccttatttcttgaggggttagctgcaggacttacataagcaaactt 505

                                                                 
Query: 465 gtttgaggacacgaatctcatgctcaactaacctctgagataggtggacattca 518
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 gtttgaggacacgaatctcaggctcaactaacctctgagataggtggacattca 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)