Query= MSMg01no424_d07.b1 MSMg01no424_d07.b1 CHROMAT_FILE:
MSMg01no424_d07.b1 PHD_FILE: MSMg01no424_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:06 2005
(642 letters)
>mm_chr16_50357646_50358687
Length = 1042
Score = 936 bits (484), Expect = 0.0
Identities = 546/582 (93%), Gaps = 24/582 (4%)
Strand = Plus / Minus
Query: 5 gaattcttactttccctagagtttagaagtgagcctggtgcggttggaaaccagaattta 64
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 704 gaattcttactttggctagagtttagaagtgagcctggtgcagttggaaaccagaattta 645
Query: 65 tgggattttatatgcagtgagaaggcttataaacatgttactaatgttgaggttctaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgggattttatatgcagtgagaaggcttataaacatgttactaatgttgaggttctaagt 585
Query: 125 aagagagaggtgtttgggattgatcggggttttagagagaccttttcgttccctcaggag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aagagagaggtgtttgggattgatcggggttttagagagaccttttcgttccctcaggag 525
Query: 185 gatatcaggtgctttaaccagatgatggcccctgggaagtgaaaagtggactgactgact 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 524 gatatcaggtgctttaaccagatgatggcccctgggatgtgaaaagtggactgactgact 465
Query: 245 gtgatcaaggacttggataggttaaggtaatatgattacatacgtgatagcaaatgaggc 304
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 464 gtgatcaaggacttggataggttagggtaatatgactacatacgtgatagcaaatgaggc 405
Query: 305 aaaataaacctcactctggcatgttcatttttcggtgggttgagtggtagagcgatatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaaataaacctcactctggcatgttcatttttcggtgggttgagtggtagagcgatatct 345
Query: 365 tagcctgttcagactggtataacaaattattgtagattggagaacttaccaaaaaccaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tagcctgttcagactggtataacaaattattgtagattggagaacttaccaaaaaccaga 285
Query: 425 agttcatttcttactcaggggttgaggccgatattaatctcgtaggaccatctcttggct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agttcatttcttactcaggggttgaggccgatattaatctcgtaggaccatctcttggct 225
Query: 485 catgaactgcattttcttttattgattgattgattgatt--------------------- 523
|||||| |||||||||||||||| ||| ||| ||| |||
Sbjct: 224 catgaattgcattttcttttatttatttatttatttatttatttatttatttatttattt 165
Query: 524 ---gtatacgagtacactgttgttgtcttcagacacaccaga 562
||||| |||||||||||||||||||||||||||||||||
Sbjct: 164 aatgtatatgagtacactgttgttgtcttcagacacaccaga 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_d07.g1 MSMg01no424_d07.g1 CHROMAT_FILE:
MSMg01no424_d07.g1 PHD_FILE: MSMg01no424_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:06 2005
(537 letters)
>mm_chr16_50203299_50204236
Length = 938
Score = 924 bits (478), Expect = 0.0
Identities = 518/538 (96%), Gaps = 14/538 (2%)
Strand = Plus / Plus
Query: 1 tcagtgactaccatcaagggtatggaaggtacaggccattaaaagtcttcttccttggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgactaccatcaagggtatggaaggtacaggccattaaaagtcttcttccttggtt 260
Query: 61 ttgattacatgggaacacttgtcccacacactaacttccttatgtattcctccttccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattacatgggaacacttgtcccacacactaacttccttatgtattcctccttccact 320
Query: 121 cccttattttgaaattaaaaaaaaagaaagaaacatgtaattacagtatagtaatcatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttattttgaaattaaaaaaaaagaaagaaacatgtaattacagtatagtaatcatta 380
Query: 181 aaaaa-gtaaatatcctatgggactagagaggcggctcagcactaagccaagtggctgct 239
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aaaaaagtaaatatcctatgggactagagaggcggctcagcactaagccgagtggctgct 440
Query: 240 cttcctgattatctgggtttgattcccagtgcccatgtggcaaataataaccctctggaa 299
|||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cttcctgaggacctgggtttgattcccagcgcccatgtggcaaataataaccctctggaa 500
Query: 300 ctccagtcccagggaattcaatactgtccttgggcctccgagaacactagcacacatgta 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ctccagtcccagggaattcaatactgtccttgggcctcggagaacactagcacacatgta 560
Query: 360 atatgcagacatacttgaacataaaatacttacacaaggaggcaaaacatccatacatct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgcagacatacttgaacataaaatacttacacaaggaggcaaaacatccatacatct 620
Query: 420 aaaataaatagatttataaaagtaaaagcaatcaagtttcatgattggtgcttttttctt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaataaatagatttataaaagtaaaagcaatcaagtttcatgattggtgctttttt--- 677
Query: 480 ttttcttttttttttcttttttttttttttatgccagtgactgagctaaggttttgga 537
|||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 678 ---tctttttt----cttttttttttt---atgccagtgactgagctaaggttttgga 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|