BAC Information

Click to search

BAC

Clone NameMSMg01-424D07
Chromosome16 (Build37)
Map Location 50,203,499 - 50,358,349
singlet/doubletdoublet
Overlap geneBbx
Upstream gene1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404
Downstream geneLOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D07.T7 (MSMg01no424_d07.b1)MSMg01-424D07.TJ (MSMg01no424_d07.g1)
ACCAG518181AG518182
length738737
length of high quality
(start - end)
642 (48 - 689)537 (82 - 618)
definitionCHROMAT_FILE: MSMg01no424_d07.b1 PHD_FILE: MSMg01no424_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:06 2005CHROMAT_FILE: MSMg01no424_d07.g1 PHD_FILE: MSMg01no424_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,357,768 - 50,358,349)(50,203,499 - 50,204,023)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTACTTTCCCTAGAGTTTAGAAGTGAGCCTGGTGCGGTTGGAA
ACCAGAATTTATGGGATTTTATATGCAGTGAGAAGGCTTATAAACATGTT
ACTAATGTTGAGGTTCTAAGTAAGAGAGAGGTGTTTGGGATTGATCGGGG
TTTTAGAGAGACCTTTTCGTTCCCTCAGGAGGATATCAGGTGCTTTAACC
AGATGATGGCCCCTGGGAAGTGAAAAGTGGACTGACTGACTGTGATCAAG
GACTTGGATAGGTTAAGGTAATATGATTACATACGTGATAGCAAATGAGG
CAAAATAAACCTCACTCTGGCATGTTCATTTTTCGGTGGGTTGAGTGGTA
GAGCGATATCTTAGCCTGTTCAGACTGGTATAACAAATTATTGTAGATTG
GAGAACTTACCAAAAACCAGAAGTTCATTTCTTACTCAGGGGTTGAGGCC
GATATTAATCTCGTAGGACCATCTCTTGGCTCATGAACTGCATTTTCTTT
TATTGATTGATTGATTGATTGTATACGAGTACACTGTTGTTGTCTTCAGA
CACACCAGACCATCCTTTGGCTCATGAATTGCATTTTCTTTTATTTATTT
ATTTATTTATTTATTTATTTACTTATTTAATTATTTAATTATTTAACGAA
TACGAGTACCTTGGTGGTGTCCTCCCAACACCCCCCAA
NNNAACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGACTACCATCAAGG
GTATGGAAGGTACAGGCCATTAAAAGTCTTCTTCCTTGGTTTTGATTACA
TGGGAACACTTGTCCCACACACTAACTTCCTTATGTATTCCTCCTTCCAC
TCCCTTATTTTGAAATTAAAAAAAAAGAAAGAAACATGTAATTACAGTAT
AGTAATCATTAAAAAAGTAAATATCCTATGGGACTAGAGAGGCGGCTCAG
CACTAAGCCAAGTGGCTGCTCTTCCTGATTATCTGGGTTTGATTCCCAGT
GCCCATGTGGCAAATAATAACCCTCTGGAACTCCAGTCCCAGGGAATTCA
ATACTGTCCTTGGGCCTCCGAGAACACTAGCACACATGTAATATGCAGAC
ATACTTGAACATAAAATACTTACACAAGGAGGCAAAACATCCATACATCT
AAAATAAATAGATTTATAAAAGTAAAAGCAATCAAGTTTCATGATTGGTG
CTTTTTTCTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTATGCCAGTGA
CTGAGCTAAGGTTTTGGACAGGATAAACGTTAGTAGTCATTCAATCTCCT
AATAGTAGGTACAGATATCTTTTTTGACAAAGAATAGGAAAGACTAGGTC
AGGATATGACTTGGGATGGCTAAGCCATAGGATGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d07.b1 MSMg01no424_d07.b1 CHROMAT_FILE:
MSMg01no424_d07.b1 PHD_FILE: MSMg01no424_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:06 2005
         (642 letters)



>mm_chr16_50357646_50358687
          Length = 1042

 Score =  936 bits (484), Expect = 0.0
 Identities = 546/582 (93%), Gaps = 24/582 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactttccctagagtttagaagtgagcctggtgcggttggaaaccagaattta 64
           |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 704 gaattcttactttggctagagtttagaagtgagcctggtgcagttggaaaccagaattta 645

                                                                       
Query: 65  tgggattttatatgcagtgagaaggcttataaacatgttactaatgttgaggttctaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgggattttatatgcagtgagaaggcttataaacatgttactaatgttgaggttctaagt 585

                                                                       
Query: 125 aagagagaggtgtttgggattgatcggggttttagagagaccttttcgttccctcaggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aagagagaggtgtttgggattgatcggggttttagagagaccttttcgttccctcaggag 525

                                                                       
Query: 185 gatatcaggtgctttaaccagatgatggcccctgggaagtgaaaagtggactgactgact 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 524 gatatcaggtgctttaaccagatgatggcccctgggatgtgaaaagtggactgactgact 465

                                                                       
Query: 245 gtgatcaaggacttggataggttaaggtaatatgattacatacgtgatagcaaatgaggc 304
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 464 gtgatcaaggacttggataggttagggtaatatgactacatacgtgatagcaaatgaggc 405

                                                                       
Query: 305 aaaataaacctcactctggcatgttcatttttcggtgggttgagtggtagagcgatatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaaataaacctcactctggcatgttcatttttcggtgggttgagtggtagagcgatatct 345

                                                                       
Query: 365 tagcctgttcagactggtataacaaattattgtagattggagaacttaccaaaaaccaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tagcctgttcagactggtataacaaattattgtagattggagaacttaccaaaaaccaga 285

                                                                       
Query: 425 agttcatttcttactcaggggttgaggccgatattaatctcgtaggaccatctcttggct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agttcatttcttactcaggggttgaggccgatattaatctcgtaggaccatctcttggct 225

                                                                       
Query: 485 catgaactgcattttcttttattgattgattgattgatt--------------------- 523
           |||||| |||||||||||||||| ||| ||| ||| |||                     
Sbjct: 224 catgaattgcattttcttttatttatttatttatttatttatttatttatttatttattt 165

                                                     
Query: 524 ---gtatacgagtacactgttgttgtcttcagacacaccaga 562
              ||||| |||||||||||||||||||||||||||||||||
Sbjct: 164 aatgtatatgagtacactgttgttgtcttcagacacaccaga 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no424_d07.g1 MSMg01no424_d07.g1 CHROMAT_FILE:
MSMg01no424_d07.g1 PHD_FILE: MSMg01no424_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:06 2005
         (537 letters)



>mm_chr16_50203299_50204236
          Length = 938

 Score =  924 bits (478), Expect = 0.0
 Identities = 518/538 (96%), Gaps = 14/538 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtgactaccatcaagggtatggaaggtacaggccattaaaagtcttcttccttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgactaccatcaagggtatggaaggtacaggccattaaaagtcttcttccttggtt 260

                                                                       
Query: 61  ttgattacatgggaacacttgtcccacacactaacttccttatgtattcctccttccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattacatgggaacacttgtcccacacactaacttccttatgtattcctccttccact 320

                                                                       
Query: 121 cccttattttgaaattaaaaaaaaagaaagaaacatgtaattacagtatagtaatcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttattttgaaattaaaaaaaaagaaagaaacatgtaattacagtatagtaatcatta 380

                                                                       
Query: 181 aaaaa-gtaaatatcctatgggactagagaggcggctcagcactaagccaagtggctgct 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aaaaaagtaaatatcctatgggactagagaggcggctcagcactaagccgagtggctgct 440

                                                                       
Query: 240 cttcctgattatctgggtttgattcccagtgcccatgtggcaaataataaccctctggaa 299
           ||||||||  | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cttcctgaggacctgggtttgattcccagcgcccatgtggcaaataataaccctctggaa 500

                                                                       
Query: 300 ctccagtcccagggaattcaatactgtccttgggcctccgagaacactagcacacatgta 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ctccagtcccagggaattcaatactgtccttgggcctcggagaacactagcacacatgta 560

                                                                       
Query: 360 atatgcagacatacttgaacataaaatacttacacaaggaggcaaaacatccatacatct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgcagacatacttgaacataaaatacttacacaaggaggcaaaacatccatacatct 620

                                                                       
Query: 420 aaaataaatagatttataaaagtaaaagcaatcaagtttcatgattggtgcttttttctt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 621 aaaataaatagatttataaaagtaaaagcaatcaagtttcatgattggtgctttttt--- 677

                                                                     
Query: 480 ttttcttttttttttcttttttttttttttatgccagtgactgagctaaggttttgga 537
              ||||||||    ||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 678 ---tctttttt----cttttttttttt---atgccagtgactgagctaaggttttgga 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space:   489056
Effective search space used:   489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)