BAC Information

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BAC

Clone NameMSMg01-424I12
Chromosome16 (Build37)
Map Location 35,887,095 - 35,887,694
singlet/doubletsinglet
Overlap genenone
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14
Downstream geneLOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I12.T7 (MSMg01no424_i12.b1)MSMg01-424I12.TJ (MSMg01no424_i12.g1)
ACCAG518429AG518430
length720747
length of high quality
(start - end)
603 (71 - 673)50 (81 - 130)
definitionCHROMAT_FILE: MSMg01no424_i12.b1 PHD_FILE: MSMg01no424_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:31 2005CHROMAT_FILE: MSMg01no424_i12.g1 PHD_FILE: MSMg01no424_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAGTTATCTGCAGTATTCTGCTGAAATTCCCATAGAGAT
ACCAAAATCAACGGAGACTGAGCTTTGCCAGAACCATGACCCAGCCCCAC
TTGGCACAACCTACTATAGAGTTGAGAATAAAATGCTTTATGAAATAATG
TAATTTTCAGTTTTGTATGGAAAAATAAATGGTAGAGAGTAGCGAAAGAT
TACTCTAGGTCCAAAGGGATTATGAATAGAATTTAGAGTTGTAGAAATAT
GTAGAAATATTCATAATATATTATAAGTCCACACCTCCCACCAATCTCTG
AAAAACAAATTCCAGGTAGAGTGAGAATTAAATACCTTACAAATAAAAAA
CAAATATATGCACCCACATAGGAAAGGCTAACAGTTCCGGAAATCTCCTT
TTGATTACTGATAGAAAACAAACTTCAGAAGACAGTTTTGGGAAGCTGGG
GAGATGGCTCAGTGGTTAAACGTGCTCCCTTCTTCACTGTTGCGAAGGAC
CTGGGTTCAGTTCCCAGCACCCACGAGGCAGCTTACAACTACCTGTAACT
CCAGTTCTAGGGGGAATCACAAGACCTTCTTCTGGCTTTTTGTAGGCTCC
TGCAGGTTTGTGCATATTCTCAGGCATGTCACAAGCATAGAATAAAATAA
GTAATCCTTTTAATAGACGG
CCTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCGGGTGTGGTGGCGC
ACGCCTTTAATCCCTGCACTTGGGAGGCAGAGGCAGGTGGATTTTTGAGT
TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGTTATAC
TGAGAAACCACCCTGTCTCAAAAAACCAGAAAATATTTTAAGTATTAATC
TACTTGGAATATGGATAGAGCAAATATCAATGCTTTCTTGTTATAGTGTG
AGTTTTCTACATATATTTTTGTTACAGAACTACACAATTAGTATTTTAAT
TAACATTGGTTTGGAGCACTTACTATTTGACTATTGTTGATTAATATACT
GTTTGAACTATCCCTGAACATTAACAATCTCGCCTGTTAGAGCTGATAGC
TTTTCCCAGTCATCCAGGTGTTCTGCCTGATTTTGACCCTTGCATCGCTG
TCCTTGGTGGAGGAGAGAACTGTCTTTATTGTCCTCTGTACTTCCTGCGC
GTCCTGTGACATATTTTCGCCATTCCTGTGACATTTACTTCTCATTTTCT
AACTCCCTCTTCTTAGCGCCCCCCCTTGTCCGCGCTTCTGCTTTTTTTCA
CCACGATTTAATTTTTCTTGCTCTTTTGTCTCTTCCCTTGGTCTTTGGTG
TTCTTTCCCCTCCGCCCGTCCCACCCTTTTTTTTTGTTTCCCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i12.b1 MSMg01no424_i12.b1 CHROMAT_FILE:
MSMg01no424_i12.b1 PHD_FILE: MSMg01no424_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:31 2005
         (603 letters)



>mm_chr16_35887076_35888076
          Length = 1001

 Score = 1139 bits (589), Expect = 0.0
 Identities = 599/603 (99%), Gaps = 3/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagtattctgctgaaattcccatagagataccaaaatcaacggagactgagctttgcca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 gcagtattctgctgaaattcccatagagataccaaaattaacggagactgagctttgcca 560

                                                                       
Query: 61  gaaccatgacccagccccacttggcacaacctactatagagttgagaataaaatgcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaaccatgacccagccccacttggcacaacctactatagagttgagaataaaatgcttta 500

                                                                       
Query: 121 tgaaataatgtaattttcagttttgtatggaaaaataaatggtagagagtagcgaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgaaataatgtaattttcagttttgtatggaaaaataaatggtagagagtagcgaaagat 440

                                                                       
Query: 181 tactctaggtccaaagggattatgaatagaatttagagttgtagaaatatgtagaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tactctaggtccaaagggattatgaatagaatttagagttgtagaaatatgtagaaatat 380

                                                                       
Query: 241 tcataatatattataagtccacacctcccaccaatctctgaaaaacaaattccaggtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 379 tcataatatattataagtccacacctcccaccaatctctgaaaaac--attccaggtaga 322

                                                                       
Query: 301 gtgagaattaaataccttacaaataaaaaacaaatatatgcacccacataggaaaggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagaattaaataccttacaaataaaaaacaaatatatgcacccacataggaaaggcta 262

                                                                       
Query: 361 acagttccggaaatctccttttgattactgatagaaaacaaacttcagaagacagttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagttccggaaatctccttttgattactgatagaaaacaaacttcagaagacagttttg 202

                                                                       
Query: 421 ggaagctggggagatggctcagtggttaaacgtgctcccttcttcactgttgcgaaggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaagctggggagatggctcagtggttaaacgtgctcccttcttcactgttgcgaaggac 142

                                                                       
Query: 481 ctgggttcagttcccagcacccacgaggcagcttacaactacctgtaactccagttctag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ctgggttcagttcccagcacccacgaggcagcttacaactacctgtaactccagttctag 82

                                                                       
Query: 541 ggggaatcacaagaccttcttctggctttttgtaggctcctgcaggtttgtgcatattct 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gggg-atcacaagaccttcttctggctttttgtaggctcctgcaggtttgtgcatattct 23

              
Query: 601 cag 603
           |||
Sbjct: 22  cag 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1001
Length adjustment: 10
Effective length of query: 593
Effective length of database: 991
Effective search space:   587663
Effective search space used:   587663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)