BAC Information

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BAC

Clone NameMSMg01-424P21
Chromosome16 (Build37)
Map Location 9,290,774 - 9,291,023
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424P21.T7 (MSMg01no424_p21.b1)MSMg01-424P21.TJ (MSMg01no424_p21.g1)
ACCAG518781AG518782
length777798
length of high quality
(start - end)
543 (35 - 577)250 (79 - 328)
definitionCHROMAT_FILE: MSMg01no424_p21.b1 PHD_FILE: MSMg01no424_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:05 2005CHROMAT_FILE: MSMg01no424_p21.g1 PHD_FILE: MSMg01no424_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCTCACCTGTGCAATACCGAATGGCAGAGAAGCACCTGAAAAAATATTCA
GCATACTTAATCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAAGTGACAGCAGAT
GCTAGCGAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGTGGAAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAA
AATGGACATAGTACTACCAGAGGATCCCACAATACCTTTCCTGGGCGTAT
ATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCAACTATGTTC
ATAGCAGCCTTTTTTGTAATAGTCAGATTCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGGCAAATAGATGGACCTGGAAGGCATC
ATCCTGAGTGAGGTAACCTAATCACAAAAGAACTCACATAATATGTACTC
ACTGATAAGTGGATATTAGCCCAGAAACTTATAATACCCCAGATACCAGA
TACAATTTGGCAAACACGTGGTAACTCAAGATGAAAGAAGACAAAGGTGG
CGAACACTTTGCCCCTTCCTTATAATTGGGAAACAAAACACCCCCTGGGA
AGAATTATTCGAAAACAAAGTTGGAAA
NACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACAGACCAACTAACTCTTAA
ATAATGGCTGCCATGTTGAGAATAAATCAGAGATCATACTCAAAGACATC
AGGGACAGAGCAACAATTGATTAGTAATGTCTGTCATGAATGTGGGGAAG
GATGTTTTGGTACTACAAGAAAGGGGAACAGCATGGGTTGTAACGGCCAA
CACCAAGCAAGTCTTTATAACATGGCAGATGCTCTTTGCAGTGATCTGCT
CTATGATAATAACTTGGCTCATTTCACTATTCTTGTTAGGCAATGTTTCT
CAGTTGGGGTGATGTCCCATACCATAGCTATTTGGTAAAGTCTGGAAACT
CTTTTGTTTGTTTTGATTGACCCCACCGCGTAAAGGTAGTGTCGTCATTG
TCCATCCGGNCACACTTGCTTCCTTGCTCAGTGCGTATTCTTTTTTGCTT
TTGCTCAATTTTCCTATCGATATGGTTTACTTCCTCCCTACTTATATTCG
CTCTTCATCTTGACTTTCTCTTCTTGTGCTTTTGCCTTTTTTTATTGTTA
TAAATACTCCCTGTTNTTATTCTTTCTTCTCTTTTTTTCATCTTGCATTC
TACACTTCGTCTCTTCTTTTTATATTATTTNTTTTCTTTCTCCTCTTCCT
TCTTGATTANCTTTTCTAATTATCCTTCGTACTTTTNCCTTTTTCTTCCT
CCACTTTTTCCTTCTTTCCTCTTTTTCTTCTTCATCTTTATTTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_p21.g1 MSMg01no424_p21.g1 CHROMAT_FILE:
MSMg01no424_p21.g1 PHD_FILE: MSMg01no424_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:05 2005
         (250 letters)



>mm_chr16_9290574_9291223
          Length = 650

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacagaccaactaactcttaaataatggctgccatgttgagaataaatcagagatcata 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ccacagaccaactaactcttaaataatggctgccatgttgagaagaaatcagagatcata 260

                                                                       
Query: 61  ctcaaagacatcagggacagagcaacaattgattagtaatgtctgtcatgaatgtgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctcaaagacatcagggacagagcaacaattgattagtaatgtctgtcatgaatgtaggga 320

                                                                       
Query: 121 aggatgttttggtactacaagaaaggggaacagcatgggttgtaacggccaacaccaagc 180
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 321 aggatgttttggtactacaagaaaggggaacagcatgggttctaacagccaacaccaagc 380

                                                                       
Query: 181 aagtctttataacatggcagatgctctttgcagtgatctgctctatgataataacttggc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aagtctttataacatggcagatgctctttgcagtgatctgttctatgataataacttggc 440

                     
Query: 241 tcatttcact 250
           ||||||||||
Sbjct: 441 tcatttcact 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)