BAC Information

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BAC

Clone NameMSMg01-426G12
Chromosome16 (Build37)
Map Location 46,513,152 - 46,513,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426G12.T7 (MSMg01no426_g12.b1)MSMg01-426G12.TJ (MSMg01no426_g12.g1)
ACCAG519856AG519857
length765779
length of high quality
(start - end)
266 (46 - 311)483 (71 - 553)
definitionCHROMAT_FILE: MSMg01no426_g12.b1 PHD_FILE: MSMg01no426_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:56 2005CHROMAT_FILE: MSMg01no426_g12.g1 PHD_FILE: MSMg01no426_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCG
GAATTCAGTTAATTCCCTTCATGTATACACTTATCTGATCCTTGAATTTA
GTTAATTCAGTTCCCAGAGGAAACTCCTACACTCAGGGTTCATGTTCTTG
ATAGTAGTCAAATTGCCCTTTTATAAATGGAAAACTGATGATGTTATTTG
TCATCTCAGAACTCTTTAAAGGGTTGTTTCCTATTATTGATGGCTGAATC
CGAAATGTTTAGCATGACCTTTAAGAATCTCTTCTAGCTGGATCCTTTCT
ACCTTCCTTGGCTTTCAGTATTGTTTTTTTTTTAATTAATTCCAATTTTA
AAAACCCAACAATTTACCCCTTTTCTCTTCCCTTTTAAAGAAAACCCTTT
TACAAAAATTTTCCCTTTTAAAATTTTTTCTCCTTTAAAAAAAAAAATTA
TGTTCCCCCCTTTTCGGGGGGGGGGGGTCCCACCCTCCTTTCCTCTCCCC
CTTAATATTTAATTATTAGTACTTATTCTTCTCCCTTCTCTATTTTATTA
TATAATTATTCTCCTCATTTTTCCCATTATCATTNCTTTTTTCCTTACTC
TAACTATTTTCTCCCTACTAACATATATCCTTCTTTTTTCTTCTACCTTT
TCTTATTCTTTTTTGTNNNNNTNACNNTTNTATCGTTTGTTTATTTCCTT
CCCTTCATATTATTTTTCTCACTATTGTCTATTATCTATTTTTTTATATT
ATTTTACTTTTCTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAGTGAAGTA
GCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAA
GAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAACCTTCTCAATAG
TCACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGTGAAA
GATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAAAAATTAAAGATCT
CAGAAGATGGAAAGACCTCCCATGTTCATGGATTGGCAGGATCTACATTG
TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCGC
ATCAAAATTCCAACTCAACTCTTCAAAAAATTAGAAAGAGCAATCTGCAA
ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGG
ATAAAAGAACCTCTGGTGGAATCACCATTCCTGACCTAAAGCTTTCCTAC
AGAGCAATTGTGATTAAAAAAAAAAAAAAACCTGGCTGGGACTGGGATAG
CGACCGACAAGCAAACCATGTGATAGAATTGAAGACCAGAGATGAACCCC
CCCTCTTGGGCCCCTGGATCTTTGAAAGGGAGTTAAACCCCCCCGGGGAA
AAAAAAACATTTCTACCATGGGGGGGGGGCCCCGGGGGGTTCTTGGTAAA
AAAAGATATGGACCTTTCTATTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_g12.b1 MSMg01no426_g12.b1 CHROMAT_FILE:
MSMg01no426_g12.b1 PHD_FILE: MSMg01no426_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:56 2005
         (266 letters)



>mm_chr16_46512947_46513613
          Length = 667

 Score =  476 bits (246), Expect = e-139
 Identities = 258/262 (98%), Gaps = 1/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagttaattcccttcatgtatacacttatctgatccttgaatttagttaattcag 65
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattcagttaattcagttcatgtatacacttatctgatccttgaatttagttaattcag 408

                                                                       
Query: 66  ttcccagaggaaactcctacactcagggttcatgttcttgatagtagtcaaattgccctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttcccagaggaaactcctacactcagggttcatgttcttgatagtagtcaaattgccctt 348

                                                                       
Query: 126 ttataaatggaaaactgatgatgttatttgtcatctcagaactctttaaagggttgtttc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttataaatggaaaactgatgatgttatttgtcatctcagaactctttaaagggttgtttc 288

                                                                       
Query: 186 ctattattgatggctg-aatccgaaatgtttagcatgacctttaagaatctcttctagct 244
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctattattgatggctgaaatctgaaatgtttagcatgacctttaagaatctcttctagct 228

                                 
Query: 245 ggatcctttctaccttccttgg 266
           ||||||||||||||||||||||
Sbjct: 227 ggatcctttctaccttccttgg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 667
Length adjustment: 9
Effective length of query: 257
Effective length of database: 658
Effective search space:   169106
Effective search space used:   169106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)