BAC Information

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BAC

Clone NameMSMg01-427D10
Chromosome16 (Build37)
Map Location 43,201,582 - 43,377,412
singlet/doubletdoublet
Overlap geneLOC667484
Upstream geneGap43, BC002163
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427D10.T7 (MSMg01no427_d10.b1)MSMg01-427D10.TJ (MSMg01no427_d10.g1)
ACCAG520468AG520469
length748743
length of high quality
(start - end)		526 (76 - 601)540 (81 - 620)
definitionCHROMAT_FILE: MSMg01no427_d10.b1 PHD_FILE: MSMg01no427_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:01 2005CHROMAT_FILE: MSMg01no427_d10.g1 PHD_FILE: MSMg01no427_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,376,887 - 43,377,412)(43,201,582 - 43,202,121)
sequence
NNNCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCATTCAGTCTCTCTAATCAACTCTGATTAGTGTTGTTTAAC
ATCAATCTTTCCTACTTTTTTCAAAGAAAGATACCAATCAGTTGCCGCAC
ACCCCTGCTTGTTAAAAGCAGCACCTCTCCTGCTGGCTTACCATTCTCTT
AATCAAAAGGGCAGGAGGAAGCAGTTGGGATTCACTTTTCTCTTTTTTTC
TTTCAAAGTACACAAATGTCAACTTCCTCAAGGATGTTTGGCACAGCGGA
GTTCAGTCATATAACGTACAAAGTCAGCTTGATCAAAAGGTTGCAGGCGG
CCCACTGCTAAGATGGAGGGAGAAAAGGAAACCACAGGCCTCCCTGAAGT
GTGAATGAGTGCACAGGCCACAGTCACATGCGTATTTACACTGGAGACAT
GCTGAGACCACAAAGGCGTATAGGAAATATGAACTCTGCCAGGACACTCT
CCATCTTTGCCTGTGAACCTGGAGCAGCACTGGTTGCCGGAGCTGTCTTC
TATTATATTAGCCAATCAGTTTCATATACTCTATAGCAACCTGCAGCCAT
GGCCAGNTTGTGGATTTTAACATTTTCTGTATGTCACATACTATAATTGG
CTTTCCCTGTCTGGGTGTGAAAGTGTTTGTACCTACATGGCACTCCTAGG
TTTGAGGTGGAAAGCTTAAGTTCTTCAATGAAGTTTCTGCTCCCTGGG

NTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAACGTAGGACTTGGAGAA
ATGATTATAAAATTTACTTGAGTATTTTATTGTTTAACTTGTTACAATGG
ACTTCTATTTCTAAAGAGATTTTAAAATGAACCTATATTTTATATTACTG
CTATCAAAGCTATCAAAGATTCCCTATAAACAAACTTGAGGGGAAATAAC
AGATCATCCAAATCAGAATGAGGCAAGAAGGAACTATATAATTTGAAAGA
CTATGTTTCAGAATGGTCATATTCTACTTCCTTTCAATAATAGCCTACCT
GCATGAACAGAAGACATATGTATATTAATTTAAAACAAGGAAGTCATAGC
ATGATGACCACAACTGATGATTTAAAACAATTTCAACCTTAAACATGAGT
AAAATACTGATAGGTGCTTACAACATGGATGAAGTAAATCTGTTTGCCAC
ACCCAGATAGTCTACTTGAATTGATCGGGTGCGGTAGAGTCTAATTGTAT
GATAGGTGCTTGGAGGAAGCAAATTCTTATTANAATTCAGTTAATTCAAA
TTTAGTATACATCTACATAAAAGAAAATGATCTCTCAGAGTGCTGACTTG
TTTTTGCCACAGAGACTAGTATGTTTTATTTTCACTGTAAACAGNACATT
TCTGTGTATCCTTACAAATATATTTATGTGATATGCACACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_d10.b1 MSMg01no427_d10.b1 CHROMAT_FILE:
MSMg01no427_d10.b1 PHD_FILE: MSMg01no427_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:01 2005
         (526 letters)



>mm_chr16_43376687_43377612
          Length = 926

 Score = 1009 bits (522), Expect = 0.0
 Identities = 525/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaactctgattagtgttgtttaacatcaatctttcctacttttttcaaagaaagatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tcaactctgattagtgttgtttaacatcaatctttcctacttttttcaaagaaagatacc 667

                                                                       
Query: 61  aatcagttgccgcacacccctgcttgttaaaagcagcacctctcctgctggcttaccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aatcagttgccgcacacccctgcttgttaaaagcagcacctctcctgctggcttaccatt 607

                                                                       
Query: 121 ctcttaatcaaaagggcaggaggaagcagttgggattcacttttctctttttttctttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctcttaatcaaaagggcaggaggaagcagttgggattcacttttctctttttttctttca 547

                                                                       
Query: 181 aagtacacaaatgtcaacttcctcaaggatgtttggcacagcggagttcagtcatataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagtacacaaatgtcaacttcctcaaggatgtttggcacagcggagttcagtcatataac 487

                                                                       
Query: 241 gtacaaagtcagcttgatcaaaaggttgcaggcggcccactgctaagatggagggagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtacaaagtcagcttgatcaaaaggttgcaggcggcccactgctaagatggagggagaaa 427

                                                                       
Query: 301 aggaaaccacaggcctccctgaagtgtgaatgagtgcacaggccacagtcacatgcgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggaaaccacaggcctccctgaagtgtgaatgagtgcacaggccacagtcacatgcgtat 367

                                                                       
Query: 361 ttacactggagacatgctgagaccacaaaggcgtataggaaatatgaactctgccaggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttacactggagacatgctgagaccacaaaggcgtataggaaatatgaactctgccaggac 307

                                                                       
Query: 421 actctccatctttgcctgtgaacctggagcagcactggttgccggagctgtcttctatta 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 actctccatctttgcctgtgaacctggagcagcactggctgccggagctgtcttctatta 247

                                                         
Query: 481 tattagccaatcagtttcatatactctatagcaacctgcagccatg 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tattagccaatcagtttcatatactctatagcaacctgcagccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_d10.g1 MSMg01no427_d10.g1 CHROMAT_FILE:
MSMg01no427_d10.g1 PHD_FILE: MSMg01no427_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:01 2005
         (540 letters)



>mm_chr16_43201382_43202321
          Length = 940

 Score =  984 bits (509), Expect = 0.0
 Identities = 532/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaacgtaggacttggagaaatgattataaaatttacttgagtattttattgtttaactt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaacataggacttggagaaatgattataaaatttacttgagtattttattgtttaactt 260

                                                                       
Query: 61  gttacaatggacttctatttctaaagagattttaaaatgaacctatattttatattactg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gttacaatggacttctatttctaaagaaattttaaaatgaacctatattttatattactg 320

                                                                       
Query: 121 ctatcaaagctatcaaagattccctataaacaaacttgaggggaaataacagatcatcca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ctatcaaagctatcaaagattccctataaacaaacttgaggggaaatatcagatcatcca 380

                                                                       
Query: 181 aatcagaatgaggcaagaaggaactatataatttgaaagactatgtttcagaatggtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcagaatgaggcaagaaggaactatataatttgaaagactatgtttcagaatggtcat 440

                                                                       
Query: 241 attctacttcctttcaataatagcctacctgcatgaacagaagacatatgtatattaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctacttcctttcaataatagcctacctgcatgaacagaagacatatgtatattaatt 500

                                                                       
Query: 301 taaaacaaggaagtcatagcatgatgaccacaactgatgatttaaaacaatttcaacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaacaaggaagtcatagcatgatgaccacaactgatgatttaaaacaatttcaacctt 560

                                                                       
Query: 361 aaacatgagtaaaatactgataggtgcttacaacatggatgaagtaaatctgtttgccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacatgagtaaaatactgataggtgcttacaacatggatgaagtaaatctgtttgccac 620

                                                                       
Query: 421 acccagatagtctacttgaattgatcgggtgcggtagagtctaattgtatgataggtgct 480
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 621 acccagatagtctacatgaattgattgggtgcggtagagtctaattgtatgataggttct 680

                                                                       
Query: 481 tggaggaagcaaattcttattanaattcagttaattcaaatttagtatacatctacataa 540
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tggaggaagcaaattcttattaaaattcagttaattcaaatttagtacacatctacataa 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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