BAC Information

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BAC

Clone NameMSMg01-428F12
Chromosome16 (Build37)
Map Location 82,276,499 - 82,276,802
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428F12.T7 (MSMg01no428_f12.b1)MSMg01-428F12.TJ (MSMg01no428_f12.g1)
ACCAG521331AG521332
length746758
length of high quality
(start - end)
270 (47 - 316)378 (79 - 456)
definitionCHROMAT_FILE: MSMg01no428_f12.b1 PHD_FILE: MSMg01no428_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:29 2005CHROMAT_FILE: MSMg01no428_f12.g1 PHD_FILE: MSMg01no428_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTATTTCGTATTCAGAGCTTTGAGACCACATCTTATTGAAAAG
CACATGCTAATTTAATAAGTTTCTCTAGTGTGCAGAGTAACGTTACTGTA
CAGGTGTAATAAACTTCATACCATTGTAGTCTTGCCTGCTTATAAAATTA
CAGGATTTTGGTAACAATAAACATGGTAAAAAAGCTTTTGATCACAATCA
TTCAAGTTCATAACCATGTCAAAATAGCAGAAATTAAAAATATACCTTAA
GAAAGTGAGTGAATTATTATTTATATCAACTCACTAGACATGATAATATG
ATTTGTTTTACTAATATTTCTTTACTACAAATAAACAAACAAAAAACACA
TTTGCCAGTGATAATTTTAAATAGTTTGGCTTTTCATAGGAGAGATTTTT
TTTCAATTTTTAAGGCAAGTAAAAAACTAAAAACCTTCTAGCTAACCATG
AATTTTTCTCAGTATTCACTATACATTTTTGAAATGTCAACTGTACTACT
AAGAGAGTATCATCCCTGCTAAGGGTTCTCATTTATAACAACTTAACTTT
TTTCATTACATTCATTGAGAATACAATTCATGATCAAACTATTTATTATG
TTGTATAGGAACATTCAGCTTTTCTATACTCGTACTAATCAATGTAAAGC
GGTATTACCGCCACGATTCATTCAGAAATACCCTTCTTATTGTTCG
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTTAGCTCTGTTCCCCAT
TTAAATAGGGTTATTTGGTTCTCTGGAGTCTACCTTCTTGAGTTCTTTGT
ATATATTGGCTATTAGCCCTCTATTGGATGTAGAAATGATAAAGATCTTT
TCCTAATGTGTTGGTTGCCATTTTGTCCTATTGATAGTGTCCTTTGTCTT
ACAATGTGGAGCAGAGACTGCCCCACTTGGGGATCCATCCCATATACAGT
AACCAAACCCAGACACTATTTTGTTTGCCAACAAGTGCTTGAGGACAGAA
GCCGGATATATCTGTCTCCTAAGAGGCTCTGAGAAAGCCTGAGAAATATA
GAGGAGGAAGCTTGCAGCCAAACATTGGACTGAGCTCAGGAGTCCCTGAT
GAGAGGAGATGAAGAACGAACTGAAGGAGCTTGAGGGAGTTTCTAGCCCC
ACGGAGGGAGCAACTATGTCTACTAGCCAGACACCCCCAGAGTTCCCTTG
GACTAGACCTCCCCCATAAGAATACACCTGGAGTGACCCCTGGAGCTGAC
CACCTATGATGGTTTTGTTGCATTTCTCTCGTGCGAACAGGCCCTTGTTT
CCTGTTTCTGTCTTATGTCCTCACTGCTGCTCAATGCCTTTTTCCTCCCT
TTTACTTGCCTTTGTTACATTGCTTCCTTTTACCTTATTCCCATTTCCTT
TCATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_f12.b1 MSMg01no428_f12.b1 CHROMAT_FILE:
MSMg01no428_f12.b1 PHD_FILE: MSMg01no428_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:29 2005
         (270 letters)



>mm_chr16_82276430_82277100
          Length = 671

 Score =  402 bits (208), Expect = e-117
 Identities = 262/304 (86%), Gaps = 38/304 (12%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtat-ttcgtattcagagctttgagaccacatcttattgaaaagcacatgcta 63
           |||||||||||  | |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 373 gaattcagtataatagtattcagagctttgagaccacatcttattaaaaagcacattcta 314

                                                                       
Query: 64  atttaataagtttctctagtgtgcagagtaacgttactgtacaggtgtaataaacttcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atttaataagtttctctagtgtgcagagtaacgttactgtacaggtgtaataaacttcat 254

                                                                       
Query: 124 accattgtagtc-------------------------------------ttgcctgctta 146
           ||||||||||||                                     |||||||||||
Sbjct: 253 accattgtagtcttgcctgcttataaaattacaggattttggtaacaatttgcctgctta 194

                                                                       
Query: 147 taaaattacaggattttggtaacaataaacatggtaaaaaagcttttgatcacaatcatt 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 taaaattacaggattttggtaacaataaacatggtaaaaaagcttttgatcacaatcatt 134

                                                                       
Query: 207 caagttcataaccatgtcaaaatagcagaaattaaaaatataccttaagaaagtgagtga 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 caagttcataaccatgtcaaaatagcagaaattaaaaatataccttaagaaagtgagtga 74

               
Query: 267 atta 270
           ||||
Sbjct: 73  atta 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space:   172782
Effective search space used:   172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)