BAC Information

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BAC

Clone NameMSMg01-428L08
Chromosome16 (Build37)
Map Location 34,793,281 - 34,793,432
singlet/doubletsinglet
Overlap geneMylk
Upstream geneMuc13, Itgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14
Downstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428L08.T7 (MSMg01no428_l08.b1)MSMg01-428L08.TJ (MSMg01no428_l08.g1)
ACCAG521611AG521612
length787766
length of high quality
(start - end)
59 (189 - 247)151 (83 - 233)
definitionCHROMAT_FILE: MSMg01no428_l08.b1 PHD_FILE: MSMg01no428_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:58 2005CHROMAT_FILE: MSMg01no428_l08.g1 PHD_FILE: MSMg01no428_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCAAATTTGCGGCGATAAAAAGATCACTATTTCGTACCGAGCGNGG
AATCNCACATTTTCGAAAACGAAGGNNGNNNNNANCAGAACAGCGCCCAC
ACGCTNCGGGCTTGCATCACGGCTATAGNCAGAAGCTATGCACATACCAA
GGAGATCATTTCTCAGAGAATAAAGCACATCAGATGATAACCACGCTGTC
ATGCTACATTCAAAATTTCAAACGACAAAAACCTCAGGAGATCCAGTGAT
TTTTTTGACAGTCTGAGTGACAAGCACATGTTCACGCGCACACACTCAGC
TACACCAACAGAGATTTTTTTTTTACACAGCNACACCCACAGCGACACAC
AGCCACACTCTTTCCCCCTGCTACCCACATACTCTTCGCTACTCACACTG
AGATATACTCACACCCTGCTATACTCACAGCTACACCTCACGACACATAT
ACTTACACACAGCTTTCCATTCCGAGACATATCAACACTAACCGTTACAT
ACCCTTCTACCCACCCTTTCACTCCCCTATCGTCTATTTCCTCTCCTTTT
TTAACCTCCTACATCACCTCTCATCCCTACCCCCCTAAGTTCCCCCTCCT
GATGTGATTTCTATCCTCCCAACCCACATCTCCCCTCCATACCCGCCCAC
GATTATAACCCCATTCTCCTTTTTTTTCCTTCCCCCTTTTCCTACTATCC
TCCATCCCTTTCCTATCAAACCTATCTTCACCCCCCCGCCTCCTTATACT
TTTCTCTCTTTTCACCCGCCTATTTTTTAACCATATC
TTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGNTTTTGGACCCATCTCCTC
CTCTTTCATATCCCTCTAGAAAGTGAGAGAGAGAAGGAATGAGCCAGAAA
GTTCTAATTATCCAGTCTGCTGACATTGTTTTTATCTGCGCCACTGATAT
TAAATGTGGACAGTATTCCATTTAAATCACAGTACCAAGAACGACTTCTG
TTTTCTTGGGCCTTTGTCCTTTTGCCTGATGCGGCCAACGTTCATTTTTC
CACCCTGCCTTGCTCTCTCTTATTCTTCTGAAATTCCATAGCACCCAATG
GCACTGGAAATTATCTGTCTACAATGTCCATCCTTGATGAGAGCCCTGAT
GCTGGCTCTGCTTGTCCCCTAGTTTTGATCCCCCAACTGAGCTTGACCAT
TTGTGCTTGAATTCTCCATGCTCATCGCTGGAGCCATCTGGACTTGTCAG
GAATCTCTTGCCATACTTCCATCTATTGCTAGTCATGTTATACGATCATC
TATTTACTTATGTCTTTTTTTTTATCTCTCTTATGAATTTTTTCTGTATT
TTTTTACCCTTCTCTCATCTCCTTCATCCGCTCCATTCATGTTCGCCTCT
TTGCTCTTCTTCTTTTCGATACATTTTCTACCTTTGCATTACCTCCCTCT
TTCTTTTCTTTTCATTTCTGTTCTTTTCTTTTTTCCCTATTTTCCTACTC
CCTCTTCCCTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_l08.g1 MSMg01no428_l08.g1 CHROMAT_FILE:
MSMg01no428_l08.g1 PHD_FILE: MSMg01no428_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:58 2005
         (151 letters)



>mm_chr16_34793081_34793632
          Length = 552

 Score =  263 bits (136), Expect = 3e-75
 Identities = 148/152 (97%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggacccatctcctcctctttc-atatccctctagaaagtgagagagagaaggaatg 59
           ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 201 ttttggacccatctcctcctctttcaacatccctcaagaaagtgagagagagaaggaatg 260

                                                                       
Query: 60  agccagaaagttctaattatccagtctgctgacattgtttttatctgcgccactgatatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccagaaagttctaattatccagtctgctgacattgtttttatctgcgccactgatatt 320

                                           
Query: 120 aaatgtggacagtattccatttaaatcacagt 151
           |||||||||||| |||||||||||||||||||
Sbjct: 321 aaatgtggacagcattccatttaaatcacagt 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 552
Length adjustment: 8
Effective length of query: 143
Effective length of database: 544
Effective search space:    77792
Effective search space used:    77792
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)