BAC Information

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BAC

Clone NameMSMg01-428P14
Chromosome16 (Build37)
Map Location 93,118,875 - 93,119,395
singlet/doubletsinglet
Overlap genenone
Upstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428P14.T7 (MSMg01no428_p14.b1)MSMg01-428P14.TJ (MSMg01no428_p14.g1)
ACCAG521814AG521815
length736743
length of high quality
(start - end)
521 (100 - 620)323 (325 - 647)
definitionCHROMAT_FILE: MSMg01no428_p14.b1 PHD_FILE: MSMg01no428_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:18 2005CHROMAT_FILE: MSMg01no428_p14.g1 PHD_FILE: MSMg01no428_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATAATTTGGGGCGCTATACGACTACTATTGCCAGAGGATCCGCGGA
ATTACTCATCTCTCTCTTTCTTCATTGTACAGTCCAGGAGGAATTCCGCT
TCTAGTAATCCACATTTCAGTAACAGAAATATCATTTTTCTTTCTTTTGA
TAGTATCGTTTATCAATCGCAAGTGGAGTCAGTTCGTTCATGGTGTCCAC
ACCTTCCTCTAAATCTCTGAAGAGCTACCCAATGGTTTGACAGAAGCTTT
TCTGTGAACGCTCGTTCTCCTTTCTGGCTGGCACGTTTCACCTTGTATGT
TGCATGTTGGTTGCTTTTCTCGATGCTGTAATGGAGTCTGTGAGTAAAGC
AGAGAATGGCTTACTGGGGGTCAGAACTGAGGGATGCAGTTCACCACGGT
GAAGACGACGCGAGTGTAAAGAGCGTGCATCCGTGGTCAGGGAGTAGAGA
GATGAATCACGCGGCACTCAGCTCTCTCTTCTATTCAGCCAGAACCCCAG
GTACTGAATAGGACTGTCTGAATCCAGGGTGGCTCATTCCCCTTCAGCTG
GCTCTCTGGAAATGCCTTCACGGATACATGGAGAGGTTTGTTTCTTATCT
GATTCTTAAACCCCAAGTTGATAACCATCGCACAACGCATCTGCTCGTTC
TGGTAGTTTCTCCTAATTATTTGCTGCGTTGATTATTTGGCCTGTCTGGC
ACATTTCTTATATCATTTGGGACACATTGGGAGCTA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTTTAACATG
ATGAGGTGTTGGATTTTGTTGAAGGTTTTTTCATCATCTAATAGATAATC
ATGTGATTTTCTTTCTTTGTGCTTGTTTATATAATGTATTACACTGATGG
ATTTCCACATATGGAACCATCCCTGCATCCCTGGGTTGAAGGCTCCTTAT
TGTGGTGGATGGTTTTGATGTGTTGGATTCAGTTTGCCAGTATTCTATTG
AGAATTTTTGAGTCAATGTTTTTAAGCAAAATTGATCTGTTGTTCTCTTT
TTTTTATTTGCTGGATCTCATCTAGGTTAGATATCAGGGTAACTGTGGTT
CATAGAATGCATTATGTAGTGTTCCTTCTGTTTTATTTTGTAGAATACTT
TGAGGAGTATTGGTATTAGCTCTTCTTTGAAAGTCTGGTAGAATTCTACA
CTAAAACCATCTGTCTCTGGGCTTTTCAGATTGGAAAGTTTTTAATGGCT
ACTTCTATTTCCTTGGGGCTAGGGGACCATTTAGATATTTTACCTGATTT
TGATTTAACTTTGGTATATGTTATCTCTCTATAAAATCATCTATTTTGTT
CACATTTTTTAGATTGCTCAAATATAGGCTTTTGAAGCAAGACCCAATGG
TTTTTCTGAAATTCCAGTTTCTGTTGGCATGCCCCTATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_p14.b1 MSMg01no428_p14.b1 CHROMAT_FILE:
MSMg01no428_p14.b1 PHD_FILE: MSMg01no428_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:18 2005
         (521 letters)



>mm_chr16_93118675_93119595
          Length = 921

 Score =  907 bits (469), Expect = 0.0
 Identities = 508/521 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctagtaatccacatttcagtaacagaaatatcatttttctttcttttgatagtatcgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttctagtaatccacatttcagtaacagaaatatcatttttctttcttttgatagtatctt 260

                                                                       
Query: 61  ttatcaatcgcaagtggagtcagttcgttcatggtgtccacaccttcctctaaatctctg 120
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttatcaatcgcaagtgtagtcagttcgttcatggtgtccccaccttcctctaaatctctg 320

                                                                       
Query: 121 aagagctacccaatggtttgacagaagcttttctgtgaacgctcgttctcctttctggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagctacccaatggtttgacagaagcttttctgtgaacgctcgttctcctttctggct 380

                                                                       
Query: 181 ggcacgtttcaccttgtatgttgcatgttggttgcttttctcgatgctgtaatggagtct 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 381 ggcacgtttcaccttgtatgttgcatgttggttgcttttcttgatgctgtaacggagtct 440

                                                                       
Query: 241 gtgagtaaagcagagaatggcttactgggggtcagaactgagggatgcagttcaccacgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gtgagtaaagcagagaatggcttactgggggtcagaactgagggatgcagttcaccatgg 500

                                                                       
Query: 301 tgaagacgacgcgagtgtaaagagcgtgcatccgtggtcagggagtagagagatgaatca 360
           || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tggagacaacgcgagtgtaaagagcgtgcatccgtggtcatggagtagagagatgaatca 560

                                                                       
Query: 361 cgcggcactcagctctctcttctattcagccagaaccccaggtactgaataggactgtct 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgcggtactcagctctctcttctattcagccagaaccccaggtactgaataggactgtct 620

                                                                       
Query: 421 gaatccagggtggctcattccccttcagctggctctctggaaatgccttcacggatacat 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 621 gcatccagggtggctcattccccttcagctggctctctggaaatgccttcatggatacgt 680

                                                    
Query: 481 ggagaggtttgtttcttatctgattcttaaaccccaagttg 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagaggtttgtttcttatctgattcttaaaccccaagttg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)