BAC Information

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BAC

Clone NameMSMg01-429A19
Chromosome16 (Build37)
Map Location 18,881,337 - 18,881,933
singlet/doubletsinglet
Overlap geneHira
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A19.T7 (MSMg01no429_a19.b1)MSMg01-429A19.TJ (MSMg01no429_a19.g1)
ACCAG521871AG521872
length742831
length of high quality
(start - end)
597 (59 - 655)36 (95 - 130)
definitionCHROMAT_FILE: MSMg01no429_a19.b1 PHD_FILE: MSMg01no429_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:24 2005CHROMAT_FILE: MSMg01no429_a19.g1 PHD_FILE: MSMg01no429_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGA
CTGGCCAGTGATCCCTCAAGATACTCCTGTCTTTTGCATCCCAAGTGCTG
GGATTACTGGTGTGGTGTTACACCTGGCTTTTTGTGTAGGTGCCAGAGAC
AGAATTCAGGTCAGTTTACCAACCCCTGACCCCCAACATTTAATCAATCA
GTTGTCCATGATGGTCCATGACTGTAAACCCAGAACCCAAGAGGCAGAAG
TTTGAGGCCAGCTGGGCTATAGATTGAGATCCCTTCCCATATATCACATA
CACACATTTTTTTTTCCATTTTAGAATTTTAATCTAGTAAGTGGTTGAAC
ATACACTTTCAGCTTATGAGGAGATTCATGTTATACAGCTGGGAGGCACA
CTTGCGCAGTCCCTGGCTCTGACCAGTGAAGCCAAGTGGAGGGCCTGGTG
TTATTGTCCCAATCTTGGGTCTTGTGGGTATCCATAGAAGGGATATGAGC
TGTCTTCATTGACCCAGATTTGTTTACCCAGATATTGCTAGTGTAACCTA
ATTACTTTAGTATTTGCTTATAGACTAAGAGAGGCCTAGCAAATGACAAA
TCTGGACCAAGACTTGGGGTCTAAAAATTGTGGCAAACATATTTTATGAT
CTTGGCAAGACCAGCAACTGCACCCAGAGGACTGGGTGAGGCTGTTAAAT
ATCAGGAAAAAGTGCTGCTGATCCTCTGGGNTGCCTGCCCTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGTTAATGGGTGTCAGGGAGACTGGAACAGGAGG
ATTAAGTGGGAATGGGGAGTAAAGATGGGGATGAAAGAGAGAATATAGGT
CCTGAGGGCCGGCCCCCCCCCCCCTTTCTCCCCCCCCCTCCCTTCCTCCC
CCCGCCCCCTCCCTCCCCGCCCCCCTCCCCCCCTCTCCCTTTTTCCCCCG
TGCCCCCCCTTCCCTACCTCCCCCCTTCCTCCCTCCCTCCCTCCTCTCCC
CCTTTCTTTTTTTTCCTTCCCTCCCCCCCTCCCCTCCCCTCCTGTCTTCT
TTTTTTCCCCCCCCTCTCCCTTTTCCCCCTCCTCTTCCCCTCCCCCCCTT
CCCTTTCCCCTTTTCCCCCCCCCTTCTCCCCTCCCCCCCCCTTTCCCCCT
CTCTTTCTCCCCCCCTTCCCTTTCCCCCCTTCTCTCCTCCCCCCTCCCCT
TCTTCCCTCTCCACGCCCTTTTTTTCTTCCCCCCTCTTTCCTTTCTTTTC
CCCCCTCTCTCCCCTTCCCTTCCTTTTCCTCTCTCCCCCCTCCCCCTTCC
CCCCCTTCCTTCTCCTCCCCCTCTTCCTTCCCTCTCTCCCCCCCCTCTTC
CTCTCTCTCTCCCCCTCCCCTCCCTCTTTTCCGCCCCCCTCCCCTTCCTC
CCCCCCCCTCCCCCTCTCTCCCCTATCCTTCCCCTCCCCCCCTCCCCCCC
TTCTCTTCCCTTCCCCCCCCCCCCCCTTTTCCCCTTCCTCCCCTTTCTTT
CTCTCCCTCCTTCTTTTCTCCTCCCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a19.b1 MSMg01no429_a19.b1 CHROMAT_FILE:
MSMg01no429_a19.b1 PHD_FILE: MSMg01no429_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:24 2005
         (597 letters)



>mm_chr16_18881137_18882133
          Length = 997

 Score = 1077 bits (557), Expect = 0.0
 Identities = 587/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatccctcaagatactcctgtcttttgcatcccaagtgctgggattactggtgtggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatccctcaagatactcctgtcttttgcatcccaagtgctgggattactggtgtggtgt 260

                                                                       
Query: 61  tacacctggctttttgtgtaggtgccagagacagaattcaggtcagtttaccaacccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacctggctttttgtgtaggtgccagagacagaattcaggtcagtttaccaacccctg 320

                                                                       
Query: 121 acccccaacatttaatcaatcagttgtccatgatggtccatgactgtaaacccagaaccc 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 321 acccccaacatttaatcaatcagctgtccatgatggtccatgactgtaaatccagaaccc 380

                                                                       
Query: 181 aagaggcagaagtttgaggccagctgggctatagattgagatcccttcccatatatcaca 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagaggcagaagtttgaggccagctgggctatagattgagatcctttcccatatatcaca 440

                                                                       
Query: 241 tacacacatttttttttccattttagaattttaatctagtaagtggttgaacatacactt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacacacattttttttttcattttagaattttaatctagtaagtggttgaacatacactt 500

                                                                       
Query: 301 tcagcttatgaggagattcatgttatacagctgggaggcacacttgcgcagtccctggct 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tcagcttatgaggagattcatgttatacagctgggaggcacacttgcgtagtccctggct 560

                                                                       
Query: 361 ctgaccagtgaagccaagtggagggcctggtgttattgtcccaatcttgggtcttgtggg 420
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 561 ctgaccagtgaagccaagtggagggcctggtgttatcatcccaatcttgggtcttgtggg 620

                                                                       
Query: 421 tatccatagaagggatatgagctgtcttcattgacccagatttgtttacccagatattgc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatccatagaaggtatatgagctgtcttcattgacccagatttgtttacccagatattgc 680

                                                                       
Query: 481 tagtgtaacctaattactttagtatttgcttatagactaagagaggcctagcaaatgaca 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tagtgtaacctaattactttagtatttgcttatagactaagagaagcctagcaaatgaca 740

                                                                    
Query: 541 aatctggaccaagacttggggtctaaaaattgtggcaaacatattttatgatcttgg 597
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatctggatcaagacttggggtctaaaaattgtggcaaacatattttatgatcttgg 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)