BAC Information

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BAC

Clone NameMSMg01-429L15
Chromosome16 (Build37)
Map Location 43,279,124 - 43,450,959
singlet/doubletdoublet
Overlap geneLOC667484
Upstream geneGap43, BC002163
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429L15.T7 (MSMg01no429_l15.b1)MSMg01-429L15.TJ (MSMg01no429_l15.g1)
ACCAG522387AG522388
length746750
length of high quality
(start - end)		531 (54 - 584)446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no429_l15.b1 PHD_FILE: MSMg01no429_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:18 2005CHROMAT_FILE: MSMg01no429_l15.g1 PHD_FILE: MSMg01no429_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,450,429 - 43,450,959)(43,279,124 - 43,279,569)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAT
GTAGTTTACTTGTTTATTTTTTGAATGTTAATGAAGTAAAACCAAATTAT
TGCTTAAGTTATTCCAGGCTTACATCATCCATTAACACTGTCCATGCCAA
TCCAGGGCAGGGAGTTGGTGGACCCCGTAGCAATAAGGTCCAAGTCCCCT
GAGTCAATGAACAAGGGGCTTGGTAGCCTGGGTAATATGTCAAGATGCTG
GCCTGGAGATTTCCATGTGTGAAGCAGGTAGAAGGAGTTTGCTAGCAGTG
AGAAAAAGTTATTTGAGGGCATTAGGTGAAAAGGCTAACAACGTCAAACC
CGGAAGTGGTCTGAAGAGACTAAGGAAGTGGACAGCTACAACACCTTCCA
TCTTCTCACTGGTCCCCTTCTTCTGAGCACTCTCGCTGTTACTGTCTTCT
ACTACTTCACACCTTTTGTCCCTCTGTTCCTCACATTTTTTTCTTCTACC
TATTTATAACAAGTAATGGGAATAATTTAAGAGGAAGTGAAGGAAAAAGA
AAAGAACTGAGAGGCTTAGGATAATATACTGCACACATACACACATATAT
AACCTATATTTGATTGATGAAGAAGCAGAAACTGGGACTTTTGAGATTTA
AAAAATTCATGGGATGTCTGGTCATATTAATCTCTAGACCAGCTGGGTTT
TAAGATTGCTAGAGAAGCTATAAGAGGATCCGGAGTAAGGAAAAAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCAGCTAGGCATTTGGCCAAAGTTAA
GAGGACACACCAGGGTTTCATGAAGCAGGGAGCTAAAGAATAATGATTTT
CTGATTTCGATTAATCAGTCCCCTGTATTTCACCTATTTCATTATTTGTA
CATAGGACCTGCCAAGAGCAGGGAAATACCATGGTGGTAGCAGATTAGAG
GGACAATTCATTTCCTTTCTATTTCTTGCCATAGAACTCACTCTTGCATC
TGATTCTTTACGGCAGTGCCTACTAAGGCTTTCTATTACCTACTTCACAG
GTAAATGAAAGTCAGTTATAAAAATTCGATCAGAGATGAAACTCATTACC
CTGAGTCTGGGAGGCATAAATATTACAAGTGTAGCTAACTGTTGATCTTT
TTAGTCATGGGAACTTAAGAAAAAAACAGACATACCTCCAATAGAATTTT
TTTCCTAATTTCACTGTTTCATGTGCATTATAAATCTAGATGTCTCTTTC
TATCATTAAATTTCAAAGACATAAAAGAAATGGAACCTCCCAAGGAGACT
GACTTGCTATGACTGACCANAAATATTTTTAAACGATGTGGCCCTTCCAG
GCTTAAAGCTGGGGATTCTAAACTCTTTGGGAGAAGAAAAATTTTCCACG
GCGAGCCCACAACCAAATCCCTAGGGGTACCGCTTGGTTTCTTAACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_l15.b1 MSMg01no429_l15.b1 CHROMAT_FILE:
MSMg01no429_l15.b1 PHD_FILE: MSMg01no429_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:18 2005
         (531 letters)



>mm_chr16_43450229_43451159
          Length = 931

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttacttgtttattttttgaatgttaatgaagtaaaaccaaattattgcttaagttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtttacttgtttattttttgaatgttaatgaagtaaaaccaaattattgcttaagttatt 672

                                                                       
Query: 61  ccaggcttacatcatccattaacactgtccatgccaatccagggcagggagttggtggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccaggcttacatcatccattaacactgtccatgccaatccagggcagggagttggtggac 612

                                                                       
Query: 121 cccgtagcaataaggtccaagtcccctgagtcaatgaacaaggggcttggtagcctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cccgtagcaataaggtccaagtcccctgagtcaatgaacaaggggcttggtagcctgggt 552

                                                                       
Query: 181 aatatgtcaagatgctggcctggagatttccatgtgtgaagcaggtagaaggagtttgct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 551 aatatgtcaagatgctggcctggagatttccatgtgtgaagcaggtagaaagagtttgct 492

                                                                       
Query: 241 agcagtgagaaaaagttatttgagggcattaggtgaaaaggctaacaacgtcaaacccgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agcagtgagaaaaagttatttgagggcattaggtgaaaaggctaacaacgtcaaacccgg 432

                                                                       
Query: 301 aagtggtctgaagagactaaggaagtggacagctacaacaccttccatcttctcactggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagtggtctgaagagactaaggaagtggacagctacaacaccttccatcttctcactggt 372

                                                                       
Query: 361 ccccttcttctgagcactctcgctgttactgtcttctactacttcacaccttttgtccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccccttcttctgagcactctcgctgttactgtcttctactacttcacaccttttgtccct 312

                                                                       
Query: 421 ctgttcctcacatttttttcttctacctatttataacaagtaatgggaataatttaagag 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgttcctcacatttttttctcctacctatttataacaagtaatgggaataatttaagag 252

                                                              
Query: 481 gaagtgaaggaaaaagaaaagaactgagaggcttaggataatatactgcac 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gaagtgaaggaaaaagaaaagaactgagaggcttaggataatatactgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_l15.g1 MSMg01no429_l15.g1 CHROMAT_FILE:
MSMg01no429_l15.g1 PHD_FILE: MSMg01no429_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:18 2005
         (446 letters)



>mm_chr16_43278924_43279769
          Length = 846

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcagctaggcatttggccaaagttaagaggacacaccagggtttcatgaagcagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcagctaggcatttggccaaagttaagaggacacaccagggtttcatgaagcagggag 260

                                                                       
Query: 61  ctaaagaataatgattttctgatttcgattaatcagtcccctgtatttcacctatttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaagaataatgattttctgatttcgattaatcagtcccctgtatttcacctatttcat 320

                                                                       
Query: 121 tatttgtacataggacctgccaagagcagggaaataccatggtggtagcagattagaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttgtacataggacctgccaagagcagggaaataccatggtggtagcagattagaggg 380

                                                                       
Query: 181 acaattcatttcctttctatttcttgccatagaactcactcttgcatctgattctttacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaattcatttcctttctatttcttgccatagaactcactcttgcatctgattctttacg 440

                                                                       
Query: 241 gcagtgcctactaaggctttctattacctacttcacaggtaaatgaaagtcagttataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagtgcctactaaggctttctattacctacttcacaggtaaatgaaagtcagttataaa 500

                                                                       
Query: 301 aattcgatcagagatgaaactcattaccctgagtctgggaggcataaatattacaagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcgatcagagatgaaactcattaccctgagtctgggaggcataaatattacaagtgt 560

                                                                       
Query: 361 agctaactgttgatctttttagtcatgggaacttaagaaaaaaacagacatacctccaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 561 agctaactgttgatctttttagtcatgggaacttaagaaaaaaacagacatacatcaaat 620

                                     
Query: 421 agaatttttttcctaatttcactgtt 446
           ||||||||||||||||||||||||||
Sbjct: 621 agaatttttttcctaatttcactgtt 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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