Query= MSMg01no430_o22.b1 MSMg01no430_o22.b1 CHROMAT_FILE:
MSMg01no430_o22.b1 PHD_FILE: MSMg01no430_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:02 2005
(421 letters)
>mm_chr16_11458178_11458999
Length = 822
Score = 754 bits (390), Expect = 0.0
Identities = 411/422 (97%), Gaps = 9/422 (2%)
Strand = Plus / Minus
Query: 5 gaattctgctctagttccc----tctgacagcacacccctgccatgctagcactagagaa 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattctgctctag----ctgagtctgacagcacacccctgccatgctagcactagagaa 567
Query: 61 gctaaggca-gggggtcccaatcaaagaccagacaagaccatataggaagaaagaacctg 119
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 566 gctaaggcaggggggtcccaatcaaagaccagactagaccatataggaagaaagaacctg 507
Query: 120 ccttaaaaagaattccacctcagaaaacacatgtgcagttttaacctgtgaacacgcaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccttaaaaagaattccacctcagaaaacacatgtgcagttttaacctgtgaacacgcaat 447
Query: 180 ccgtgttgacgggcaaagcatgagcaggcctaggcttaagttcacatacagatcggtaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccgtgttgacgggcaaagcatgagcaggcctaggcttaagttcacatacagatcggtaaa 387
Query: 240 caaagtcatcccttaagttgtttacagcttacttgaaaataatctcttaagcaaaaatga 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 caaagtcatcccttaagttgtttacagcttacttgaaaataaactcttaagcaaaaatga 327
Query: 300 aaaatgccaacacttccaaaagaaactaacagtaacaaattgactctccatttggttctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaatgccaacacttccaaaagaaactaacagtaacaaattgactctccatttggttctg 267
Query: 360 aaataaaaatatcaagcaccttcaccttcctggatgtcaccagcagcctctgcatcccct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaataaaaatatcaagcaccttcaccttcctggatgtcaccagcagcctctgcatcccct 207
Query: 420 gc 421
||
Sbjct: 206 gc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space: 334956
Effective search space used: 334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_o22.g1 MSMg01no430_o22.g1 CHROMAT_FILE:
MSMg01no430_o22.g1 PHD_FILE: MSMg01no430_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:02 2005
(293 letters)
>mm_chr16_11284420_11285112
Length = 693
Score = 528 bits (273), Expect = e-154
Identities = 288/293 (98%)
Strand = Plus / Plus
Query: 1 tgcaggtgtacaactcggccttgggggttttcctgtcgctcccatccttcccactatact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaggtgtacaactcggccttgggggttttcctgtcgctcccatccttcccactatact 260
Query: 61 cctgggaaacagccaccagggactcctcacagtgctcagtctctggagggtttagcattt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggaaacagccaccggggactcctcacagtgctcagtctctggagggtttagcattt 320
Query: 121 ttgccaagttggagtagaccaaggatggctgcctgagataggctcttgctatgtagctca 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ttgccaagttggagtagaccaaggatggctgcctgagataggatcttgctatgtagctca 380
Query: 181 ggttggccttgaacctacaatcctctgcttctgtactgggattaagacatgcaccacttt 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 381 ggttggccttgaacctacaatcctctgcttctatactgggattaagacatgcaccaattt 440
Query: 241 gtccagcattaaaacattgtttttaattattgaaattagatttatttagtgtg 293
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccagcattaaatcattgtttttaattattgaaattagatttatttagtgtg 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
