BAC Information

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BAC

Clone NameMSMg01-430P15
Chromosome16 (Build37)
Map Location 48,049,256 - 48,049,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430P15.T7 (MSMg01no430_p15.b1)MSMg01-430P15.TJ (MSMg01no430_p15.g1)
ACCAG523342AG523343
length862825
length of high quality
(start - end)
150 (77 - 226)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no430_p15.b1 PHD_FILE: MSMg01no430_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:06 2005CHROMAT_FILE: MSMg01no430_p15.g1 PHD_FILE: MSMg01no430_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGGGTGGGAGGTTGGGGGGGAGGGCGGAGGGAATTTCCAACGGACCGCG
GGAGTCTTGGTTTCCCGCTGGAGCCCATTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAATATCCTTTCCCAATCTTTTGGCGGCCTT
TTTATCTTATTGACTGTGTCTTTTGCTTTGCAGAAACTTTGTAGTTTCAT
GATGTCCCCTTTGCCAATTCTCGATCTTACTTTATAAGCCATTGTTGTTC
TATTCACGAATTTTTCCTCTGTTTTTTTATCTTTGAGGGTTTTCCCTACT
TTCACCTCACTAATACTCTTTCGCCTCTGGTCCTTATGTTGTTGTCCCTC
TCACTTTCTATATGACTTTCTCCCTTCTTTTATTTTCATCTGACACCTCT
TTTAATTTTTTATTTCTATCTCATTTCTTTTTTTCCCTTTTTTTCTTCTC
TTTTACCTCCTTCTAACCTTTGTTATTTCTATCCATTAATTTTCCTCCTT
TCCCGCATTCCTCTCTATTTCCCCAATTCTTCATTTTTCCCCCCCCCTTT
CTTTAAATCTCCTTTTTATCTCCTTTCTTATACCCTCTCCTAAAACTCTT
ATCCATATCTTTACCCCTCTCCCTACCTCTACCTCTACTCTTCCCCATTT
TCTCCTCTACCTTTCCCTATTTCTCCCCTTCAACCTCATCTTCTTTTATT
TACCCCCATTATATTCTTTATCACCTCTCCATACCTCCTTTCACATTCCC
TTCCTGACCGTTCTTTTCCTTCTCTCCCCTTTTTTTTTCTCCTCACTTTC
TCTTTCCTTTCT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTCTTTAAAAGCAATAG
ATAGTCCATAAATGATAATTCCATAGAGTATTACCAGAGTATTAATAGTA
GTCAGGTTGGTACCATCTGAAAGGACTATAAAATAGACCAGTTTTGGCCA
TCCCTCCCTCCCCTAGGGCTCCCAGGGACTGGACCACCAACCAGAGAGTG
CACATGGAGACATCAATTGCCGCAGACCCTCTTGGTCCCTTGTCTGCGTG
GAATGGATCTCTAGCGCAGGTGGTTTTTGGAGTCGGTGGTAATTGACAGT
TAGACTCGACACAATGTAGTGTGGATCTGACTCGCTTTTGTTCCATTGAT
CATTTGCTGTCTTTTACTTCATTAAACTACTTGCATTTGCGCCGATTCTC
TTTTTTCCGCTCTTCTTTGTTTTTTGGTTTTCCCTATTCTCTCCTTTCTT
TTTTTTTTCTCTCTCTTTTTTTTTTTTTGTTTACCCCCTGTCTCTTCTAC
CGTTCCTGCGCTCTCCTTTTTTTTTTTCCCTTTTTATCCTTTTCCTTCTT
CCCCTCTCTTTTCTTCTTCTTATTCCTTCCTTTATCCTCTTTTTCTATTT
CCTTTTTCCTTGGTTTTTCGCCCCGTCTTCCCTTCTCTTTCCCTCTCTTT
TTCCCTTCTCCTTCTCCGTTCTCCCCCTATTTTTCACCCCGCCTACTATC
TCCCCCCTTCCTCTTTCTGTTTTACCTTTTTCTCCCTTCTCTCCCCCCTC
CCTCTTTTTAATCTCTTTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_p15.g1 MSMg01no430_p15.g1 CHROMAT_FILE:
MSMg01no430_p15.g1 PHD_FILE: MSMg01no430_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:06 2005
         (244 letters)



>mm_chr16_48049170_48049813
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtctttaaaagcaatagatagtccataaatgataattccatagagtattaccagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatgtctttaaaagcaatagatagtccataaatgataattccatagagtattaccagagt 270

                                                                       
Query: 61  attaatagtagtcaggttggtaccatctgaaaggactataaaatagaccagttttggcca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtaatagtagtcaggttggtaccatctgaaaggactataaaatagaccagttttggcca 210

                                                                       
Query: 121 tccctccctcccctagggctcccagggactggaccaccaaccagagagtgcacatggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tccctccctcccctagggctcccagggactggaccaccaaccagagagtgcacatggaga 150

                                                                       
Query: 181 catcaattgccgcagaccctcttggtcccttgtctgcgtggaatggatctctagcgcagg 240
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 149 catccattgccgcagaccctcttggtcccttgtctgcgtggaatggatctctagtgcagg 90

              
Query: 241 tgg 243
           |||
Sbjct: 89  tgg 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)