BAC Information

Click to search

BAC

Clone NameMSMg01-431A23
Chromosome16 (Build37)
Map Location 50,485,419 - 50,485,883
singlet/doubletsinglet
Overlap geneLOC100043414
Upstream geneLOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx
Downstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431A23.T7 (MSMg01no431_a23.b1)MSMg01-431A23.TJ (MSMg01no431_a23.g1)
ACCAG523406AG523407
length762790
length of high quality
(start - end)		471 (32 - 502)105 (67 - 171)
definitionCHROMAT_FILE: MSMg01no431_a23.b1 PHD_FILE: MSMg01no431_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:12 2005CHROMAT_FILE: MSMg01no431_a23.g1 PHD_FILE: MSMg01no431_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGCGCTATACGACTCCTATAGTTCGAGGATCCGCGGAATTCCGTGTAA
GTATCTCCCTTGGTTTTTGTCTCGGTCTGATTTCTGTTGCGATTTTAGAA
TACTTAAGATTAGGGACCTCGCGGAAAGGAAAGTGGTGCACGTGTGTGCA
TGCATCGTTCAGGAGATCTCCAGTTAAAAGGTTGGCGAGTCGTCCGGCAA
CGACCCTCGTGAAGCCTCAACTCATGACAGGAAAACAGAAGGCCACACAG
ACTTGTGCTAGAGCCAGAAAACACAAGGGGTGGACGCCCCCTTGTCATAA
CCTGCTCCCTTGGGAACTCACCCACAGGAGCAAGGTCAATCCATTTACGA
AAGCTTTCCTCTCGTGACCCAAACTCCTCCTCTTAAGGCGCCACTTCTCA
ACGCCGCCACTGGAGAATGAAGGGGGACAGAAATGCTCAAACCACAGCCA
GGTACAATGTGAATTCCAACTGCAAACTTCGAGTTCTAACGGAGTTTCCA
TATGCACTTTAATCAAGAGTGAATGGGAATACNACCTCCTGGAGAAGGAG
CTCAATAAATGGAGGGTAGTCAGCTTAGCTTCTAGGGTAGGAGCTGTGAG
GAGGTAATCNGACCAGCGTCTGAGATAAGACTGTGAATTGACAGATACTA
CCCTGCTAGCCAAGTTAAAGTCCATCCTGTAATCAGAACGGGGTTTGCTT
GAATAAATTCAAGGCTTGTTCTGGGGTGTGAGGGCCCAAAGGTCCTACCC
ACAAAAGGGAGG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAGTCTCTACTCTGCATAAAATAGATACATTTT
AGTTATTAGTTAACTAGGGAAAGTATAATGATGGAGGAAGGGAGAGAGGG
AGAGAGACAGAGAGGGAGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGNNNNNNNNNNNNNNNNGNNNNNNNNTGGNNNGGGNGGGGGGGGGNG
GGGGGGGGGNGGGGGGTGGGGGGGGGGGGGGGGGGCGGGGGGTGGGGGGG
GGGGGGGGTGTTGTCGTTGTTTGTTGNTTGGGTCCCTCTTTTCTTCTTTT
TTTCTCTTGCCCTTCTCTCCCTCCCCTTTCTTTTTTTTTTCCCCTTTTCC
CCTTTCCCCCCCCGCGTTCCCCCTCCCCCGCCCCCTTTCTCCTCCCCCCC
CTCCCCTCTCCCTCCTTCCCTTTTCCTCCTTCCTCCCCCCCCTCTTCCCC
CCCTTCCCCCCCCCCCCTTTCCCCCTCTCCCCCCTTTCCCCCTTTTTTCC
CCCTCCTCCCCCCTCTCCCGTGCCTCTCTCTCTCCCCTCTTCTCTCCCCT
CTCTTCCTCCCCCCTCCTCTCCCCCTCCCCTCCCTTTTTCCTTTTTTTCC
CCTTTCCTCCCCCCCCCCTTTTTCCCCCCCTCTTTTTTTCCTCCCTCTCT
TTTCTCCCCCCTCCGCTCCTTTCCCCCCCTCCCCCCCTTTTCCTCCCTTT
CCCCCTCTCCCCTCCCCTTTTCTTTCCCCCTCTTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_a23.b1 MSMg01no431_a23.b1 CHROMAT_FILE:
MSMg01no431_a23.b1 PHD_FILE: MSMg01no431_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:12 2005
         (471 letters)



>mm_chr16_50485213_50486083
          Length = 871

 Score =  830 bits (429), Expect = 0.0
 Identities = 456/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccgtgtaagtatctcccttggtttttgtctcggtctgatttctgttgcgatttta 66
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 671 gaattccgtgtaagtagctcccttggtttttgtctcagtctgatttctgttgcgatttta 612

                                                                       
Query: 67  gaatacttaagattagggacctcgcggaaaggaaagtggtgcacgtgtgtgcatgcatcg 126
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 611 gaatacttaagattagggacctcgcggaaaggaaagtggtccacgtgtgtgcatgcatcg 552

                                                                       
Query: 127 ttcaggagatctccagttaaaaggttggcgagtcgtccggcaacgaccctcgtgaagcct 186
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 551 ttcaggagatctccagttaaaaggctggcgagtcatccggcaacgaccctcgtgaagcct 492

                                                                       
Query: 187 caactcatgacaggaaaacagaaggccacacagacttgtgctagagccagaaaacacaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caactcatgacaggaaaacagaaggccacacagacttgtgctagagccagaaaacacaag 432

                                                                       
Query: 247 gggtggacgcccccttgtcataacctgctcccttgggaactcacccacaggagcaaggtc 306
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 gggtggacgcccccttgtcataacctgctcccttgggaactcacccacaggagcaacgtc 372

                                                                       
Query: 307 aatccatttacgaaagctttcctctcgtgacccaaactcctcctcttaaggcgccacttc 366
           ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 371 aatccatttacaaaagctttcctctcgtgacctaaactcctcctcttaaggagccacttc 312

                                                                       
Query: 367 tcaacgccgccactggagaatgaagggggacagaaatgctcaaaccacagccaggtacaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcaacgccgccactggagaatgaagggggacagaaatgctcaaaccacagccaggtacaa 252

                                                        
Query: 427 tgtgaattccaactgcaaacttcgagttctaacggagtttccata 471
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgtgaattccaactgcaaacttcgagttctaacggagtttccata 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |