BAC Information

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BAC

Clone NameMSMg01-431F01
Chromosome16 (Build37)
Map Location 60,684,007 - 60,684,472
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F01.T7 (MSMg01no431_f01.b1)MSMg01-431F01.TJ (MSMg01no431_f01.g1)
ACCAG523602AG523603
length7191,270
length of high quality
(start - end)
472 (49 - 520)---
definitionCHROMAT_FILE: MSMg01no431_f01.b1 PHD_FILE: MSMg01no431_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:34 2005CHROMAT_FILE: MSMg01no431_f01.g1 PHD_FILE: MSMg01no431_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTATATTCCATTGAGGCCAGGAGAACCAGAAACACAAACTA
AGGGAAAGATAAAATTGTGTACAGTGTTTGGCTCTGACATGAGTCACCAT
GCCTAAGCTTTATACACACCTTCATGCTGGACACTAGTTATGACTCTAGT
GGTCAGCCATGAACCTGCCCATGGGCCTTGCTTTATGAATGAACTATGAG
ATTAAGTAACAATATTTATGGATTCTTATTCTTATTCCTAATTGCTATTT
AATGTTTCTAATTATTGTCTGATATCTAAATACCATGGGTAGCTCATTGG
TTCAACAAAGATGAAAGTATTCACAGAAGACAAAGCTCTTTATACAAAGA
GGAGTCTAACTCAGCATGCAAATCCATATCTAGAAAATAGGTATTTACAC
TGTTTGGTTACTGAAAGTGTGTTCTTATTTTTTAATAAAAACTACAATAG
ACATATTGAAAAATAAGTCAGAAGTTAGTATGCAGAAAAATCTATATTGC
AGAGTAGGAGAGCCAGAGAAAGGGATGGACACGTATTTACATAAAAACCG
ATTATCTAAACCTTTTACTGCTTTTATTACGGCTCATTTTTTAAGCTATT
GAATGTGACATTAGACTATTTCCAGAACTAATGGGACCATTTCTTTTTTC
CCCTATGGTACTGATAAAG
AGAAAAAAAAACAATCCGCGGCGGCTGTCACACGATGGATTCCTCTCATT
CCTAACATCGCCCAATCTCTTATAGCTTCCCGGCTCCACAAGAATCCAAC
CAATCAAATAGCGTTAGGAGTACTAAGACACGNGAAAGAAATATGACAAT
AGGGGAGACATGTAATAAGACCAATGTTATCAGTAGATCCCCGCGGCACT
ACCCTAATTGTTAGTGTTCTGGCGGACAGAAAGCACAAGACAGTGTCAGT
TACTGGCTGCCTCTTGAAGCGACTGTCGTAGATAAACATTCTACATAAAG
ATTTTGCGGACCTAGTGAAGGGACATTATAAAGAACGGTTCAGACGGACG
TGAAAGGACAGTCGTATATATCGCGAGCGAACTAGTTCGCTACAGATGAT
TGGCAATAATGTAAGAGGACACGAGGCGATGTCAAGAGTGAGAATCCATC
TTAGATCCATCGGTCCNGAAATAAATATCCCGAGCATTATGCTATGCAGG
GTTCTAGAGAGACACCCAAGTTAGAGCCCGCCCACATGATGAGAGAAGGT
AACACCACTTCAGCCGGGCCGTAGATTCACGGTGTATATACGATACGCAA
TATGCAGTTTCGGTCGTCTAGTTCACAGCCCGCACCAACCGTTGTGGCCT
TTATACCGCGTAATAGTTGACGCAACAATAAGATTACTATCTGAAAGACG
CGATAATACATTTTAAGATCTCTCAATCCAGATTCGCTTATGGTTAGATG
TTAGAACACATTACTCATGTCACGCTATTGTTGTTATGGCGCGANTACAG
CCACGCCCAATATTTGTCATACCCGCGTTTGATTATGTGAGTGGGGTCAA
GTGACACGCGCTCTGATGGTTGTCGTAATAGGTCATTGTGATTAGCTATA
CACTTTGCGTCATACCCCTATAAGAGATCGGCGGAACATGAATTCGCGCG
GCGTATTACCCGCACCTTATACGCGGCCTCTTTCTAGCGGCCGCGTATAT
CTCCCGGTTGTTATAGGTAAGCCGACGATTTGAGCAGTTACATCACGAGC
TGTTTTACGCAGTGTGTCAACAATATGCGTCTACACTCGCTGTTGTAATT
AGTACTCTTCACGTATTGATTCTCCCACGAANTATAAGAATGTGTAGCTG
CGTGAGGGAGCAGTGGGTGTATAACAATTTATCACCAATACTACGCGACG
AGCATGTCACTTGTATTCTATTAGTGCAATACCGATCTACGACTACATTG
TTCAGCTAATATGCTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f01.b1 MSMg01no431_f01.b1 CHROMAT_FILE:
MSMg01no431_f01.b1 PHD_FILE: MSMg01no431_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:34 2005
         (472 letters)



>mm_chr16_60683801_60684672
          Length = 872

 Score =  862 bits (446), Expect = 0.0
 Identities = 461/466 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   attccttatattccattgaggccaggagaaccagaaacacaaactaagggaaagataaaa 66
           ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 672 attccttatatactattgaggccaggagaaccagaaacacaaactaagggaaagataaca 613

                                                                       
Query: 67  ttgtgtacagtgtttggctctgacatgagtcaccatgcctaagctttatacacaccttca 126
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 612 ttgtgtacagtgtttggctctgacctgagtcaccatgcctaagctttatacacaccttca 553

                                                                       
Query: 127 tgctggacactagttatgactctagtggtcagccatgaacctgcccatgggccttgcttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgctggacactagttatgactctagtggtcagccatgaacctgcccatgggccttgcttt 493

                                                                       
Query: 187 atgaatgaactatgagattaagtaacaatatttatggattcttattcttattcctaattg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgaatgaactatgagattaagtaacaatatttatggattcttattcttattcctaattg 433

                                                                       
Query: 247 ctatttaatgtttctaattattgtctgatatctaaataccatgggtagctcattggttca 306
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 432 ctatttaatgtttctaattattgtctgagatctaaataccatgggtagctcattggttca 373

                                                                       
Query: 307 acaaagatgaaagtattcacagaagacaaagctctttatacaaagaggagtctaactcag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acaaagatgaaagtattcacagaagacaaagctctttatacaaagaggagtctaactcag 313

                                                                       
Query: 367 catgcaaatccatatctagaaaataggtatttacactgtttggttactgaaagtgtgttc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 catgcaaatccatatctagaaaataggtatttacactgtttggttactgaaagtgtgttc 253

                                                         
Query: 427 ttattttttaataaaaactacaatagacatattgaaaaataagtca 472
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttattttttaataaaaactacaatagacatattgaaaaataagtca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)