BAC Information

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BAC

Clone NameMSMg01-432A15
Chromosome16 (Build37)
Map Location 42,205,309 - 42,205,478
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667450, Lsamp
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432A15.T7 (MSMg01no432_a15.b1)MSMg01-432A15.TJ (MSMg01no432_a15.g1)
ACCAG524156AG524157
length644772
length of high quality
(start - end)
177 (51 - 227)539 (68 - 606)
definitionCHROMAT_FILE: MSMg01no432_a15.b1 PHD_FILE: MSMg01no432_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:37 2005CHROMAT_FILE: MSMg01no432_a15.g1 PHD_FILE: MSMg01no432_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAATAAGAGGGCTCCAGTAGGTACATTGGAGGCAGAAGA
GATGTTTTGCCAATCCATGAAGTGATGAAGGGATATTCAGGGATGGATAT
TTGATCACAGAATACTTCAGCAAAGATCAGTGTCTCCAAGCTCCAGTACT
ATAGTTCAGCAGAATGATAGCTAAAGATGCAGCAGGACTATTTTTGAAGA
ATGATTTTGATTTTTAAATGGAAACATTCGGTACTGGGGTCTGGGGGGAG
GAATGGGGAACCCCCCTTTTTGGGGTTCCCCAAGGGGGCGGGGAACCCTA
CTTGGGCCTTTCGGGAAAAAAGGAAACCCCCCTTGGGGGGGGCCCGGGGG
TTCCCCCTCGGGGGCCCCCTACCGGGGAGAAAAAAATTTTTTTAAAAAGG
GGGGGTTTTTAAGGGGGGAAAAAAAAAAGACTCTTTTTTTGGGGAAAAAA
AAAAAAAAAAAAAAATTTTTTTTGAAAAGAAAAAAATTTTTTTTTTTTTT
AAAAAAATTTCTCCTCTTTGGGGGGGGGGGGGGGGGGGGGGGGCACCCCC
CCACAAAAAAAAACNTCTTTTTTTTTTTTTTTTCTTTTGGGGGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGCTAGGTAAGACCCTTAAGTGACTTTTTAC
TCCAGCAGCTTAGATAGCATCCTTTAGTACTATAAACACTAGCTGGCAGG
GATGAAGCTTCTGGTCAGAAACAACTTGATCTTGCAATGTCCTATGACCA
ATGTCTGCTGTGTCTTCAGCAATATGGTCTTACCACCAAGTCCATAAAGG
TAAGCAATAGCAAAATGGTGTTGTTTTGGAGGTCTTTGAGACATCTCTGA
CCAACAACTTGAGGGGAGACAACCCCATATATTGGATTATAGATATGGCA
CTGAAATTTTTATTTGGCAACCAATGGCTTCTAAGAAGAGCATAATCCCA
TTTGTAAGTTGACTCCAAAGATATATATATATATACACATACACATACAT
ATATACACACACATACATATATAATATAATAATAAATATTAAAATTGAAT
AAATTATACACATATATTAGGTTATATATAATAATATATACTTGTATTAA
TATTTATTTTATCTATATTATAAATATATATAATTCAGTTATATATTTAT
AACACCTTTGGTGTTAGTTTTCAATGAAGNTCTTCCTCTGTCCTACATTA
CAACCTCTTTCCCTACCTAAACCTCCCTTCCCATTAACCTCTTCTTACCT
CCTTCATAACAATAAAAGCGAATTTAAAAAAAAAGGATGCCCAGATAATT
GGTAGAATAAAGAGGCTGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_a15.b1 MSMg01no432_a15.b1 CHROMAT_FILE:
MSMg01no432_a15.b1 PHD_FILE: MSMg01no432_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:37 2005
         (177 letters)



>mm_chr16_42205106_42205678
          Length = 573

 Score =  290 bits (150), Expect = 3e-83
 Identities = 168/174 (96%), Gaps = 4/174 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaataagagggctccagtaggtacattggaggcagaagagatgttttgccaa 63
           ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct: 204 ggaattcctaataagaggg-tccagtaggtacactg-aggcagaagagatgttttgccaa 261

                                                                       
Query: 64  tccatgaagtgatgaagggatattcagggatggatatttgatcacagaatacttcagcaa 123
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 262 tccatgaagtgatgaagggatattcagggatg-atatttgatcacaga-tacttcagcaa 319

                                                                 
Query: 124 agatcagtgtctccaagctccagtactatagttcagcagaatgatagctaaaga 177
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 agatcagtgtctccaagctccagtactacagttcagcagaatgatagctaaaga 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 573
Length adjustment: 8
Effective length of query: 169
Effective length of database: 565
Effective search space:    95485
Effective search space used:    95485
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)