BAC Information

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BAC

Clone NameMSMg01-432C13
Chromosome16 (Build37)
Map Location 20,765,827 - 20,766,313
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd
Downstream geneLOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432C13.T7 (MSMg01no432_c13.b1)MSMg01-432C13.TJ (MSMg01no432_c13.g1)
ACCAG524246AG524247
length768784
length of high quality
(start - end)
501 (84 - 584)211 (225 - 435)
definitionCHROMAT_FILE: MSMg01no432_c13.b1 PHD_FILE: MSMg01no432_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:46 2005CHROMAT_FILE: MSMg01no432_c13.g1 PHD_FILE: MSMg01no432_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAGATCCGCGGATTCACTA
ATGAGTTCCCTAGACCTTCAATAAAAGCTAANACCTCTGGGCAGTGGTAG
CACAGGCCTTTATTCCCAGTCTTCAGGAGGCAGAGACAGGCAGATCTCTA
TGAATTCAAGGCCAGCCTGGTCTACAAAGTGAATTTCAAGACATCCTGGG
CTACACAGAGAAACCCTGTCTCAAAACAAACAAACACAAACAAACAAAAA
GGCTAAAACCAATGCTTCTCTATTCCACAACATAAAAAAGTAAGAACATT
AGCATTATCAAACTCCTTTCTCTAAGCTGGTAACAGAGAGACAGAGACAC
AGAGAGGTAACAGATCAGCTTTCCTGATGAACATAGACACATATGAGTGC
GTCCTCCTCACCCTAACTCAACGCTGCTGTGGTCCCAGTGTGTCCACTCG
TGTCTCTGGAGTCCTGTCCTCTTCCCTGACTTTCTGTATGCACTGCAGCT
CACAGGACCTGCACCACTTGATGCTCCACATGCTCCTATACCCCGCATCT
GCCTCCCTGCCCTCCTTGGGTCAGACAGCAGTCCTGCACCTTTGCCTGTC
CAACTCGGGTGCTCTTCAACGGTGCCAACATCCTGACATCCTAGGGGCCC
ACTGTGCAGGTCCTGCAGCCTGGCTGGCAGCCAAGATAGCACCCCCGCTA
AGTACTTTGTGGGCACCCGCTCTGACAACCTGAAAAAGGATCTTGGGTGA
GGCCCTGTCCACAAAAGA
CTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCTGCATTCCCTCCTGCTGAGCAGGACTCAAGTCCAATTAGG
TGGGTGTTGGGTACCCTCAAAATAAAGTGACGTTGTTGCAGCTTTGGGAG
TGTTACACTGAGCTGGGCATTCTGATTTATACAATTTACAGCTGGCTAGG
ACTATTGATTGCTCCTCTCTTTGGCAGCTTACAGAGCGCCTTAAGACATT
GTGAGAGCCAGACCTCAGGGAAGAGGCCTCCAGGTCAGTTCCACTCAATT
CCTTAGCAACAAAGCCTTACCTTCAAGTTCTGGTAGGCAACCAAGGACAA
CAGCAATAGCTTATATTGTTTTAGGAGTCTCTCGGACCCTCCTGACCAAC
AACTCTGAGGAAGGTTTTCTATGCCTGGCCCTGAGATTGTGTTAGTCGTT
GGCTCTTGAGGGGAGCATTATCACCCCACGTGGTGTAAAAAGTTAGACAC
TATTATAACTTTCTCCAGGGCCTCATTGTGGAGTTCCTGGCTTGCTTAAA
ACCACTCTGTAAACCAGGCTAGCCTTGATTAACAAAAAATCACCTGGCCT
TGGCCCCTTTATTTTATCCCCATATTGGGATTGAAAAAAGGGCCCCATTT
CCGGCCTCATTCTCTCTTTCTGCGGCGTTCTTCTTTTTTTTTTTTTCAAC
GCTCCNCACTATCTCCCTTCTAATCACCCCACCCTTTATTCTTACCATCA
CTCTTCTTTATCCCTTCACATTATTCCCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_c13.b1 MSMg01no432_c13.b1 CHROMAT_FILE:
MSMg01no432_c13.b1 PHD_FILE: MSMg01no432_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:46 2005
         (501 letters)



>mm_chr16_20765475_20766375
          Length = 901

 Score =  841 bits (435), Expect = 0.0
 Identities = 477/497 (95%), Gaps = 10/497 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgggcagtggtagcacaggcctttattcccagtcttcaggaggcagagacaggcag 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cctctgggcagtggtagcataggcctttattcccagtcttcaggaggcagagacaggcag 780

                                                                       
Query: 61  atctctatgaattcaaggccagcctggtctacaaagtgaatttcaagacatcctgggcta 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atctctatgagttcaaggccagcctggtctacaaagtgaatttcaagacatcctgggcta 720

                                                                       
Query: 121 cacagagaaaccctgtctcaaaacaaacaaacacaaacaaacaaaaaggctaaaaccaat 180
           ||||||||||||||||||||||          ||||||||||||||||||||||||||||
Sbjct: 719 cacagagaaaccctgtctcaaa----------acaaacaaacaaaaaggctaaaaccaat 670

                                                                       
Query: 181 gcttctctattccacaacataaaaaagtaagaacattagcattatcaaactcctttctct 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | 
Sbjct: 669 gcttctctattccacaacataaaaaagtaataacattagcattatcaaactcctttcaca 610

                                                                       
Query: 241 aagctggtaacagagagacagagacacagagaggtaacagatcagctttcctgatgaaca 300
           |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 609 aagctggtgacagagagacagagacacagagagataacagatcagcttttctgatgaaca 550

                                                                       
Query: 301 tagacacatatgagtgcgtcctcctcaccctaactcaacgctgctgtggtcccagtgtgt 360
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 549 tagacacatatgagtacgtcctcctcaccctaactcaacgctgctatggtcccagtgtgt 490

                                                                       
Query: 361 ccactcgtgtctctggagtcctgtcctcttccctgactttctgtatgcactgcagctcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccactcgtgtctctggagtcctgtcctcttccctgactttctgtatgcactgcagctcac 430

                                                                       
Query: 421 aggacctgcaccacttgatgctccacatgctcctataccccgcatctgcctccctgccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aggacctgcaccacttgatgctccacatgctcctataccccgcatctgcctccctgccct 370

                            
Query: 481 ccttgggtcagacagca 497
           |||||||||||||||||
Sbjct: 369 ccttgggtcagacagca 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)