BAC Information

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BAC

Clone NameMSMg01-432E24
Chromosome16 (Build37)
Map Location 48,761,320 - 48,761,740
singlet/doubletsinglet
Overlap geneTrat1
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, EG667501
Downstream geneRetnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432E24.T7 (MSMg01no432_e24.b1)MSMg01-432E24.TJ (MSMg01no432_e24.g1)
ACCAG524361AG524362
length808784
length of high quality
(start - end)		280 (48 - 327)421 (75 - 495)
definitionCHROMAT_FILE: MSMg01no432_e24.b1 PHD_FILE: MSMg01no432_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:59 2005CHROMAT_FILE: MSMg01no432_e24.g1 PHD_FILE: MSMg01no432_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGAAACTGAACCCATTTTAGCTTGGGTTCAAATTAATGCAG
CTATTGTGGAAATCAGTGTAGAGATTTCTCACAGAGCTAAAAACAGAACC
ACTGTATGCCCCATCTTTCTCATTCCTGAGCATTTGCCCAGACAATTCCA
TACCTTACCATAGAGAGAGCTGCATTCCCCCATTTTTCTTGATACTTTAT
TCACCATAGCAAAGAATTGGAATCAACCTTGTTATCTATTGATGGATGGA
TGGATGGATGGATGAATGAATGATAGATATTTTATNNNNNNNNNNNNNNN
NTTNNTTTTNTTTTTTTTTTTTTTTTTTTTTNNTTNTTNNNNNTNNNNNN
NNTTTTTTTNNNTTTTTTTNNTTTTTTTNTTTTNTNTNTATTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTNTTTTTTTTNNTTTTATT
TTNTTTTTTTTTTTTATTTTAATTATTTTATTTTTTATATTTTTTATTTT
TTTTANTATNATTTTATTTATAATTAATTTATTTTTTANATTNTATTTAT
TTTATTATATNTNTATTANTTTTTTATTTAAATATANATTTTTTATTTAT
TTTTTTTTNTTTTTNTTTTTTTAATATTTATTTTTTATTTTTTTTTTATT
TATNATATTTTTNTTATTTATTTATTAANTTAATTTTTAATATATTAATT
TTAATNTATATTTTTTTTTTTTTTTATTTAATTATAATTTTAATTTTTTA
TATATAAA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTTAAATTGAGGGAGCCCTCAGG
GTGAAAACAATCCAAGATCTCTCACGGTTACAACAAGCTGTTAACGACAT
CTCATAACAGTATGTACGCCCGAGGGTTGCCAGGGTCTGCGTTTGAGCAG
GTACCATACAGTGATTTGCCAGAAGGTCTTACCTCGTCTCTGCTTCTCTA
CATAGTGGGAAATATTGAAGATCAACGATATAACCAGAGCCAAGCCCAAG
AAGGCTAGAAGTCCCCAGAGGAAGAAGGGGCATCCCGAGCTTCCTGGAAA
CAAAAGTAGATGTGTTTGTGATAGGACGGCTTACTATACAGTTTTATTTC
AGCTAAGGTCATGATTCAAACCACTGCATTTAGCTGAGGTGACAGTTCAC
ATCAGGGAGTGCAATATTTGAGAGATTAAGATACTAGAATTTTTAGGAGT
CTGGGCAACCCTGGGATATGTAGTAAGGGTCTGGCTCAAATTTATTAGTA
AATGAATTCTTTTCCCTTACTTGGGAGGAATGGTAAACCTGGCCCAAAAT
AAAAAATCCCGGTGAAGGGGAATTTTGCACNTTTCTAAAGGTTTTTAAAT
CCCTGGCTTCTTAATTTTCTAAGTACATTTGTGCATTTTTTTCTTTTTTT
TTACTACTTTTTATTTTCTTTCATATTTTTCTCTTTGTGTTTTCCATATT
CTTCTTCTTTCTTTTTTGTTCCTTCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_e24.g1 MSMg01no432_e24.g1 CHROMAT_FILE:
MSMg01no432_e24.g1 PHD_FILE: MSMg01no432_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:59 2005
         (421 letters)



>mm_chr16_48761120_48761940
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttaaattgagggagccctcagggtgaaaacaatccaagatctctcacggttacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttaaattgagggagccctcagggtgaaaacaatccaagatctctcacggttacaac 260

                                                                       
Query: 61  aagctgttaacgacatctcataacagtatgtacgcccgagggttgccagggtctgcgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgttaacgacatctcataacagtatgtacgcccgagggttgccagggtctgcgttt 320

                                                                       
Query: 121 gagcaggtaccatacagtgatttgccagaaggtcttacctcgtctctgcttctctacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaggtaccatacagtgatttgccagaaggtcttacctcgtctctgcttctctacata 380

                                                                       
Query: 181 gtgggaaatattgaagatcaacgatataaccagagccaagcccaagaaggctagaagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggaaatattgaagatcaacgatataaccagagccaagcccaagaaggctagaagtcc 440

                                                                       
Query: 241 ccagaggaagaaggggcatcccgagcttcctggaaacaaaagtagatgtgtttgtgatag 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagaggaagaaggggcatccagagcttcctggaaacaaaagtagatgtgtttgtgatag 500

                                                                       
Query: 301 gacggcttactatacagttttatttcagctaaggtcatgattcaaaccactgcatttagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacggcttactatacagttttatttcagctaaggtcatgattcaaaccactgcatttagc 560

                                                                       
Query: 361 tgaggtgacagttcacatcagggagtgcaatatttgagagattaagatactagaattttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggtgacagttcacatcagggagtgcaatatttgagagattaagatactagaattttt 620

            
Query: 421 a 421
           |
Sbjct: 621 a 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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