BAC Information

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BAC

Clone NameMSMg01-432F03
Chromosome16 (Build37)
Map Location 96,402,715 - 96,403,017
singlet/doubletsinglet
Overlap gene4921526F01Rik
Upstream geneKcnj15, Erg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb
Downstream geneSh3bgr, B3galt5, Jam4, Itgb2l, Pcp4, Dscam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432F03.T7 (MSMg01no432_f03.b1)MSMg01-432F03.TJ (MSMg01no432_f03.g1)
ACCAG524367AG524368
length832785
length of high quality
(start - end)
198 (42 - 239)303 (73 - 375)
definitionCHROMAT_FILE: MSMg01no432_f03.b1 PHD_FILE: MSMg01no432_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:00 2005CHROMAT_FILE: MSMg01no432_f03.g1 PHD_FILE: MSMg01no432_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTCAATATTTCCCCACCCACTTACACACATGCCTTGCACACATAACAC
AGTGAGTGCTTTATATAAATAGCAAAGAAAGGCACTCACATCCAGCTACC
TGACGACCCTGGAGTTCCAGGCCAGCTACGGCCACAGTAAGACCCTGCCT
CAAAAGCCAACTTTTTAAAAACAATTAAACAATAGAAATATGGCAGTAAT
ACGCGCTGGCTGTCCGAGCTTGAGAGCAGTCAAGTTCCTCCAGACTACGT
ACGAACTAGTGGGGAAAATACCGAGTTTTTTTTTGAAGCGAAAGGTCTCT
GGGCCTTATGGTGGGCCTCTATTGGTGGCCTTCAATTGCTACTCTTTCTT
GGCGCTTCCCCCCCNNCCGCTCCTTAATATTTTGGGTTCCCCTCCCCGAC
CTTATCCTTTTTTCTTNNCTNNNCNTCTAGANNNNNNNNNNNCTGTTAGG
TGGNNNNNNTGTNNNNNNNNTGATCTGTAAGTGTTGAGTGGNAGCNTNTG
ACACTTTCCCCCTCCCCCCCCCTTCTCGGTTCTTTAGGGGCGTGGGGATG
TTCTGCGGGTCGTTGGCGGCGGTTGTTGCTCGCTGGCCCAGTCTTGATGT
AAGAGTCGTGGTCTTCCGTTGTGTGTGTATTTGGTCCTTTGTCTTCCCCC
GCACCCAGGCCNTTCTTCACATTTTCCATACATCTTCCGNCCCACCTCTT
TTCTTCTTTTTTATCTTCGCAAGAAAACGCTCTTTTTTTTTTTTTTTTTC
CNCCCGATACNCCACCTATCGATCGCGACCGG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATTTAACAGTATTAGTCGGAAAGAC
TTGTTTCCCTTTACAGAATTGCGGGGCTCTCGAATGCTAGCTAAGCATGT
GCTCACGTGCTCAAGGCCACTGAGCTGCGTCCCAAGCACAGAGCCTCTTT
AAAGAGTGCTGTAAATTAGGGGAACTTTTTCTTCTCTGAGAAGGAGGAGG
GCAGGCAGAGGGCAGGCAGGCAGACAGACAGACACTCTGTACCCCGGGCC
AGTCTAGATATCACTATGAAACCCCTATTAGCCTTAAGCTCAGAGCCGTC
TTCCTGCCTCGGCTTCCTTCGGGGAAGAGGCAGTTGCAAGCACAGGACAC
CATGCCCGGTCAGAGAGGAGCTTCAGTTGATGGTACCTGTATTCTCTACT
GTCCTAATTCGTAGCCGGGCACACTCCTTTTTGTATCCCTTTTCTTCACT
TTTCATCTTTCTCATTTTTCTTCTCTTCCCCTTCCTCTCTTTCTCCATAT
TTTATCTTGTCTTTCTCGCTTTCTTTCTCCATTTCCCCTTTTATATCTAT
CCCATTTCATTTCCCCTTCCTTCTATTCCCTATTTCTTACTTATTCTTTC
TTTTATTTTAATCTTTTTTTTCCTCTTATCTCTCTCTATACATTCACCTC
CTATTTTCCTCCTTCTCCCTCATTCTTTCACCCCCCCTCTTTTTCTTCCC
TTCCTTCGCTTTCCTCATTTTCCTTCCCACTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_f03.g1 MSMg01no432_f03.g1 CHROMAT_FILE:
MSMg01no432_f03.g1 PHD_FILE: MSMg01no432_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:00 2005
         (303 letters)



>mm_chr16_96402615_96403317
          Length = 703

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatttaacagtattagtcggaaagacttgtttccctttacagaattgcggggctctcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttatttaacagtattagtcggaaagacttgtttccctttacagaattgcggggctctcg 344

                                                                       
Query: 61  aatgctagctaagcatgtgctcacgtgctcaaggccactgagctgcgtcccaagcacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatgctagctaagcatgtgctcacgtgctcaaggccactgagctgcgtcccaagcacaga 284

                                                                       
Query: 121 gcctctttaaagagtgctgtaaattaggggaactttttcttctctgagaaggaggagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcctctttaaagagtgctgtaaattaggggaactttttcttctctgagaaggaggagggc 224

                                                                       
Query: 181 aggcagagggcaggcaggcagacagacagacactctgtaccccgggccagtctagatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aggcagagggcaggcaggcagacagacagacactctgtaccccgggccagtctagatatc 164

                                                                       
Query: 241 actatgaaacccctattagccttaagctcagagccgtcttcctgcctcggcttccttcgg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 163 actatgaaacccctattagccttaagctcagagcagtcttcctgcctcggcttccttcgg 104

              
Query: 301 gga 303
           |||
Sbjct: 103 gga 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)