BAC Information

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BAC

Clone NameMSMg01-432G20
Chromosome16 (Build37)
Map Location 88,785,426 - 88,785,824
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672
Downstream geneEG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432G20.T7 (MSMg01no432_g20.b1)MSMg01-432G20.TJ (MSMg01no432_g20.g1)
ACCAG524448AG524449
length785760
length of high quality
(start - end)		421 (46 - 466)379 (74 - 452)
definitionCHROMAT_FILE: MSMg01no432_g20.b1 PHD_FILE: MSMg01no432_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:08 2005CHROMAT_FILE: MSMg01no432_g20.g1 PHD_FILE: MSMg01no432_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATTTTCCCCTTGGATATGTTAAATAGGATTGATAAAGGGAATC
ATTTTTCCTGGTAATTTCTTATCTATGGTTATTTACTCTGTGCTTATACA
GCCCTGGTGGCACCTAGGTTTACTTAGTGTTTACTAAGAACACCTGTAAC
CCATTCTATGTGTAGTAAAAAATTTATCAGAGGAAAATAATTATCTCAGA
CAATTATTATTATTTCATAAAATAATATAATTTAATAATATAAATTATTA
TTTAGGAAAAAAGTAATTGTTTGATTGCCCTCTTTAGAAGATGATCACTC
GGGCTCAGCAGATGAAAAGATGTGTTGACTCATTGCATTCACTGATGACT
AAAGGAAAACTGAAAACGTGCATGCATCATTCCTTGCCAGTAGCAGAAGA
AAGAATCACTGAAGGTGGACTGTAACCAACCCCATGCCAGGTCTGTAAAT
ATCTCAGACAGATAATTCTGAGAATCTGATTTCCTCATCTTGTTCCAAAC
AAACTTAAAAAGATTTTTTAACCCCTAAAATTTTTGTCCAATGGAAAAAA
ACCTCCCAATTCCCACTAGAATGGAATTTTTGGTATAAAAATGTGTTAGG
AAAAAAACATGCTTTCCCATTGGGTTTTGGGGTGTGTTTTTTTTTCCCTC
ATCTCTTCCTTTCCCCTCTTCTTTCCCTCTCCCTTTTTCCTTTCTTCTCC
TTTTTCCCTCCTTTCGCTTTTTTATCTCTTTTTTA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGGCTGTCTTCTATCTTTCTTTTTT
TCTTTCTTTTTTTCTTTCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC
TCTTTTTGATAGTTACTTTATATACATTTTAAATGTTATCCCCTTTCCTG
GTTTCCCCTCTGAAAAGCCCCTATCCCCTTCCCCTCCCCCTGCTCACAAT
GCTGCTTCCTGGCCCCTGGCATTCCTCTACACTGGGGCATAGAACCTTCA
CAGAATCAAGGGCCTCTTCTCCCATTGATGAACAACTAGGCCATCCTTTG
GTACATATGGGGCTAGAGCCATGAGTTCCTCCATGTGTACTCTTTGTTTG
GTGGTTTAGTTCCTAGGAACTCTGTGGGAGCGGGTAATGGTTAGTTCATA
TTGTTGTTCCCCTTATGCATTTGCTAACCCATTATATTTCGTTGTTTCAT
TTCTTATTTTTCTTTCATAGTTTACCCTGTGCTTTATCCTTTTTTGAGCT
TTCCTAAACACCACTTCTATTTTTATTTCCTTTCTCGTTATCTTCGTTGG
ATAAATGTTCTTATCTCTCTTTCTTTTATTCTCCACTTCTTTTTTTCTGT
TATTTATACCTTTCTTTTTTCTCTTTACTTCACATAATACTATACTACCT
TACTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_g20.b1 MSMg01no432_g20.b1 CHROMAT_FILE:
MSMg01no432_g20.b1 PHD_FILE: MSMg01no432_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:08 2005
         (421 letters)



>mm_chr16_88785426_88786246
          Length = 821

 Score =  683 bits (353), Expect = 0.0
 Identities = 388/403 (96%), Gaps = 7/403 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatattttccccttggatatgttaaataggattgataaagggaatcatttttcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattcatattttccccttggatatgttaaataggattgataaagggaatcatttttcct 340

                                                                       
Query: 65  ggtaatttcttatctatggttatttactctgtgcttatacagccctggtggcacctaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 339 ggtaatttcttatctatggttatttactctgtgcttatacagccctggtagcacctaggt 280

                                                                       
Query: 125 ttacttagtgtttactaagaacacctgtaacccattctatgtgtagtaaaaaatttatca 184
            |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 279 ctacttagtatttactaagaacacctgtaaccaattctatgtgtagtaaaaaattcatca 220

                                                                       
Query: 185 gaggaaaata---attatctcagacaattattattatttcataaaataatataatttaat 241
           ||||||||||   |||||||    ||||||||| ||||||||||||||||||||||||||
Sbjct: 219 gaggaaaataattattatct----caattattaatatttcataaaataatataatttaat 164

                                                                       
Query: 242 aatataaattattatttaggaaaaaagtaattgtttgattgccctctttagaagatgatc 301
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 163 aatataaattattatttaggaaaaaagtaattgtttgatggccctctttagaagatgatc 104

                                                                       
Query: 302 actcgggctcagcagatgaaaagatgtgttgactcattgcattcactgatgactaaagga 361
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 103 actcgggctcagcagatgaaaggatgtgttgactcattgcattcactgatgactaaagga 44

                                                      
Query: 362 aaactgaaaacgtgcatgcatcattccttgccagtagcagaag 404
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  aaactgaaaacgtgcatgcatcattccttgccagtagcagaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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