BAC Information

Click to search

BAC

Clone NameMSMg01-432H21
Chromosome16 (Build37)
Map Location 22,565,453 - 22,727,269
singlet/doubletdoublet
Overlap geneDgkg, LOC666459
Upstream geneVps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, LOC671242
Downstream geneCrygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432H21.T7 (MSMg01no432_h21.b1)MSMg01-432H21.TJ (MSMg01no432_h21.g1)
ACCAG524498AG524499
length774796
length of high quality
(start - end)		381 (70 - 450)346 (76 - 421)
definitionCHROMAT_FILE: MSMg01no432_h21.b1 PHD_FILE: MSMg01no432_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:14 2005CHROMAT_FILE: MSMg01no432_h21.g1 PHD_FILE: MSMg01no432_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,565,453 - 22,565,833)(22,726,951 - 22,727,269)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACAGGGGATTACACCAATAGAGGCGAGAAATGGTAAGGTAGCAGTC
ACATGGGGGCAAATACCTTTGGACCCATCTGTGGTGAAATCTGCCAGTTG
TTTAAACCTAAGACAGGGAGTGATGGGTGCAGACCCGCTATCCCAGTACA
CCTAGCATCCCCATATCCTTCCCTCTGGCCAAAAGCTGCCCCTCCATCTG
ACTCCAGCCCCACCCTATGGACTGCTTATTGCTATGGAAGAGAATAGGAC
TGCTGTCCTACATAGCTTCCTTCCTGTTAGAGACCTCTGGGTATTCTGCA
TGGTTTAAGTAGGGTGATTTCATCTATTGTTGACTGTCCAGAGGTGCTGA
AGGCCCCCAAGGAGTGGGCCCAGCATCCTCATAAGAGTACATGCAGGAGG
AGGTGGGGCTGGAGGCAATGGCTATGTCTGGGTTTGGTTTCTAGGCTCTA
CCTTGAGACTAATTCAGGCTATAGGTGGGGTCCTCAATATAATTGGTTTG
GACCCTACCAAAATTTATTTTTTTAAACCTGAAATCTGGTTCTTCGATCC
ATCGTGTCTTTTCTCTAACGAATAATTCTGTTAGTATATTTTTTTTTTTT
GTCCCCCCGTTTTTTTCCCTCCCTTAAGTTATTTTTTTTCCACCATCTCT
ATTTATTTTACTTAGATTATTGTAAATTGTTTTCATTACTATCCCTATCT
TTTTTATATTCTTACTTTTTATTC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATCTACCTTAGTATTGAGACAGG
CTCTCTCACTGAACCTCTAGCTCATCATTTTAGCTAGACAGGTTCGTCAG
TCAGTGAACCCGCCTCTCCCCAAACTCCCTGCACTAGGTTTGCAGGTGCC
CATCAGCTGTACTTGGCTTTTTAAAACCAGAATGCTGGAGATCTTAACTC
AGATCCTCATGCCTGCACCCTGAGCACTTTGCTCCCTGAAGTATCTCCCC
AGATCTGTGGAAACCCTAGGCAAAATTTAAAAATGTTCTGTTTAGGAAGT
TTGGGAGCTGCTTGCATGAGTAAAAAAGCTTCTTTATAATGAAACATTTT
GGGCCTCTAAATATACTGCTCCGACAGTGACTCTCTATATAGACCTTTTT
AGTAGAAAATTCTTTAATCCCCTCCCACACCTTTTTTATTGTGATATGTC
TAGCCGTTCTCTTTTACCGTTTCTCCTTCTCTTTTTTTCTCTTACTTTTT
ATTTCTCACATTTTCTCTTACTTTTTTCATATAATTTATACCTTATATTA
TTTCATTCCCTTTCTCTTTTTATCCTCCTCTTTTCCCCTCCAAATTAATT
ATTTTTTCTTTCTTTTATCCCCCTTCTATTCTCTTTCTTCTATCCTCCCA
CCCTTTCCTTCTTATTCTCTTTCTCTTCCATTATTCTTCTCTCTCCTACT
TTTTCTTTCCTTTCTTCACTTTCTATCTTTATCAGTTCATTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_h21.b1 MSMg01no432_h21.b1 CHROMAT_FILE:
MSMg01no432_h21.b1 PHD_FILE: MSMg01no432_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:14 2005
         (381 letters)



>mm_chr16_22565253_22566033
          Length = 781

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagaggcgagaaatggtaaggtagcagtcacatgggggcaaatacctttggacccatc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aatagaggcgagaaatggtaaggtagtagtcacatgggggcaaatacctttggacccatc 260

                                                                       
Query: 61  tgtggtgaaatctgccagttgtttaaacctaagacagggagtgatgggtgcagacccgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggtgaaatctgccagttgtttaaacctaagacagggagtgatgggtgcagacccgct 320

                                                                       
Query: 121 atcccagtacacctagcatccccatatccttccctctggccaaaagctgcccctccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcccagtacacctagcatccccatatccttccctctggccaaaagctgcccctccatct 380

                                                                       
Query: 181 gactccagccccaccctatggactgcttattgctatggaagagaataggactgctgtcct 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gactccagccccaccctatggactgcttattgctatgggagagaataggactgctgtcct 440

                                                                       
Query: 241 acatagcttccttcctgttagagacctctgggtattctgcatggtttaagtagggtgatt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatagtttccttcctgttagagacctctgggtattctgcatggtttaagtagggtgatt 500

                                                                       
Query: 301 tcatctattgttgactgtccagaggtgctgaaggcccccaaggagtgggcccagcatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatctattgttgactgtccagaggtgctgaaggcccccaaggagtgggcccagcatcct 560

                                
Query: 361 cataagagtacatgcaggagg 381
           |||||||||||||||||||||
Sbjct: 561 cataagagtacatgcaggagg 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_h21.g1 MSMg01no432_h21.g1 CHROMAT_FILE:
MSMg01no432_h21.g1 PHD_FILE: MSMg01no432_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:14 2005
         (346 letters)



>mm_chr16_22726524_22727269
          Length = 746

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  gctctctcactgaacctctagctcatcattttagctagacaggttcgtcagtcagtgaac 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gctctctcactgaacctctagctcatcattttagctagacaggttcgtcagtcagtgaac 687

                                                                       
Query: 85  ccgcctctccccaaactccctgcactaggtttgcaggtgcccatcagctgtacttggctt 144
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccgcctctccctaaactccctgcactaggtttgcaggtgcccatcagctgtacttggctt 627

                                                                       
Query: 145 tttaaaaccagaatgctggagatcttaactcagatcctcatgcctgcaccctgagcactt 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttaaaaccagaatgctggagatcttaactcagatcctcatgcctgcaccctgagcactt 567

                                                                       
Query: 205 tgctccctgaagtatctccccagatctgtggaaaccctaggcaaaatttaaaaatgttct 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgctccctgaagtatctccccagatctgtggaaaccctaggcaaaatttaaaaatgttct 507

                                                                       
Query: 265 gtttaggaagtttgggagctgcttgcatgagtaaaaaagcttctttataatgaaacattt 324
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 506 gtttaggaagtttgggagctgcttgcgtgagtaaaaaagtttctttataatgaaacattt 447

                              
Query: 325 tgggcctctaaatatactg 343
           |||||||||||||||||||
Sbjct: 446 tgggcctctaaatatactg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |