Query= MSMg01no432_j09.b1 MSMg01no432_j09.b1 CHROMAT_FILE:
MSMg01no432_j09.b1 PHD_FILE: MSMg01no432_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:21 2005
(259 letters)
>mm_chr16_54771097_54771757
Length = 661
Score = 485 bits (251), Expect = e-142
Identities = 258/261 (98%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 1 gccaaaacaagagagttaagaactaatttaaccactttaatccccaccagggaaaatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccaaaacaagagagttaagaactaatttaaccactttaatccccaccagggaaaatata 260
Query: 61 gaagatatgttaggat--aaaaaaaaatagagatgttttgctttaaaatttagcattctg 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagatatgttaggattaaaaaaaaaatagagatgttttgctttaaaatttagcattcta 320
Query: 119 caattgtacgtatttttatattgagccatatgttctcattccagtggcttataattcaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattgtacgtatttttatattgagccatatgttctcattccagtggcttataattcaga 380
Query: 179 gagcaggcatcttctcttttgttaatttttaaaaaatactgcttttcatcactgaatatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcaggcatcttctcttttgttaatttttaaaaaatactgcttttcatcactgaatatg 440
Query: 239 cattactatgttattaacatt 259
|||||||||||||||||||||
Sbjct: 441 cattactatgttattaacatt 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 661
Length adjustment: 9
Effective length of query: 250
Effective length of database: 652
Effective search space: 163000
Effective search space used: 163000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no432_j09.g1 MSMg01no432_j09.g1 CHROMAT_FILE:
MSMg01no432_j09.g1 PHD_FILE: MSMg01no432_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:22 2005
(403 letters)
>mm_chr16_54941333_54942135
Length = 803
Score = 731 bits (378), Expect = 0.0
Identities = 390/394 (98%)
Strand = Plus / Minus
Query: 1 tcagaacaagtagactaataatttaaaatatgcttaattgaaatataaaagaacatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tcagaacaagtagactaataatttaaaatatgcttaattgaaatataaaagaacatcttg 648
Query: 61 aaagaaaaattaaatgagaattataattcttaaaaataaaaatctaaataaatgaaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaagaaaaattaaatgagaattataattcttaaaaataaaaatctaaataaatgaaactt 588
Query: 121 aaatccaaagaacacagttcaagagtttccttgaataccaccttgagtactatcaaaagg 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 587 aaatccaaagaacacagttcaagagtttccttgaatactaccttgagtactatcaaaagg 528
Query: 181 taataaaaaaaaggtgttgaaaacatgtcaataaaataaaaaaattgccaagtaaaagta 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 527 taataaaaaaaaggtgttgaaaacatgtcaataaaataaaaaaaatgccaagtaaaagta 468
Query: 241 aaatcactaattttcagttaataagcttcttgggagaaacggtggacatattaaggttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaatcactaattttcagttaataagcttcttgggagaaacggtggacatattaaggttgg 408
Query: 301 ctatgggcaaaaggttatcagataagaaataaaatctattaatcctacaactaattaaaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctatgggcaaaagattatcagataagaaataaaatctattaatcctacaactaattaaaa 348
Query: 361 aaagcaacatgtctgaactagagtggaggggtag 394
||| ||||||||||||||||||||||||||||||
Sbjct: 347 aaatcaacatgtctgaactagagtggaggggtag 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
