BAC Information

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BAC

Clone NameMSMg01-432K03
Chromosome16 (Build37)
Map Location 27,906,347 - 27,906,718
singlet/doubletsinglet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12, 1600021P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432K03.T7 (MSMg01no432_k03.b1)MSMg01-432K03.TJ (MSMg01no432_k03.g1)
ACCAG524605AG524606
length784778
length of high quality
(start - end)
515 (38 - 552)489 (68 - 556)
definitionCHROMAT_FILE: MSMg01no432_k03.b1 PHD_FILE: MSMg01no432_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:25 2005CHROMAT_FILE: MSMg01no432_k03.g1 PHD_FILE: MSMg01no432_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACAAGTAGCCAAT
GTCAAACTAATGGAGAGAAACTTGAAGCAATCCCACTAAAATCAGGGACC
AGACAAGGCTGCCCACTTTCTCCCTACCTATTCATTATAGTACTTGAAGT
CCTAGCCAGAGCAATTCAACAACAAAAGGAGATCAAGGGGATACAAATGG
CAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATATGATAGTATAC
ATAAGTGACCCCAAAAATTCTACCAGAGAACTCCTAAGCCTGATAAACAA
CTTCCGTGAAGTAGCTGGATATAAAATTAACTCAAACAAAACAGTGATTT
TTCTTTACACACACAAAAAAAAAAAAAAAAAAAACAGGTTGAGAAAGAAA
TTAGGGAAACAACACCCTTCACAATAGTTACAAATAATATAAAATGCCTT
GGAGTGACTCTAACTAAGAAAGTGAAAGATCTCTGAAAAAAAAGAAATTG
AAGAAGAGCTCACAAAATGGAAAGATCTCCCATGCTCATGGAGTGGCAGA
ATTATATAGGAAAAATGGCTATCTTGACCAAAGCAATCCTACAGATTCAA
TGGGATCCCCATTAAATTTTTGACAAATTCCCCTGAGGTAGAAAAGGGAA
TTTGCAAATCCATCCGGGATTAAATAAAACCCAGGATAGCGAATTCTTTT
TTCTTTTTTAAAAGAACCTTGGGGGGTATCCCCN
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTGCCAGGTGGACACAGATACACCCATATGTC
CCTAGTGAAGTACAGTCTGGCCCCAACACATAAAGTTCCAACCAGCTGTA
AACCGATTTATCAACACATGAACCTGTGGACACATTTCAGATTCAAACTC
ATATTCTTTCTTTTAGTGTTTGTCTGTCTCTCTGTAATGACATATGGGTG
TGCCCTTCCCCCAGTCTTGAGCAGGCTAAACAGACCTCCAGTGCTTGCCA
CAATGCCTTTAACAACCCAGGTGGAGTCATTGTCTTACTGCCTGCACCTG
CAATTTCCTACAGGAACTTAGAAGAATAGATTGCCCACTGAGCTTGCTTT
GCAATTTAATCAAGCTAAAACAAAGGATAGGTTTTGTGGCTTTCCCTTTA
TAAACTGGAGATGCTGAATTAAAGTTTGAGCCTTGATCAGAACCTTTGTC
TTGGCTTCCTCCTTCTCTCTCATCCTGTTCTTTTCAAGTCTAGCTCCCCT
TTCAGGAAATCCAGTTCACCCATGGCTGCTGGATGGCTACAGGTTGCAAC
CAAATGAAGGGTCTGAAAACGGGGGGGGGGGGCGTTTTTATTCTCTTCAC
ATTTACTTCTACCACTATATTTAATTCTAATATTAAATTTCTATTAATAC
CCACTTCATTTTTACATCTCTTATCTTTTTATATATTATCTAAATCGAAA
ACTACCCACACTTCACTTCCACCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_k03.g1 MSMg01no432_k03.g1 CHROMAT_FILE:
MSMg01no432_k03.g1 PHD_FILE: MSMg01no432_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:26 2005
         (489 letters)



>mm_chr16_27906347_27907235
          Length = 889

 Score =  634 bits (328), Expect = 0.0
 Identities = 352/372 (94%), Gaps = 19/372 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgccaggtggacacagatacacccatatgtccctagtgaagtacagtctggccccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 actgccaggtggacacagatacacccatatgtccctagtgaagtacagtctggccccaac 313

                                                                       
Query: 61  acataaagttccaaccagctgtaaaccgatttatcaacacatgaacctgtggacacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acataaagttccaaccagctgtaaaccgatttatcaacacatgaacctgtggacacattt 253

                                                                       
Query: 121 cagattcaaactcatattctttcttttagtgtttgtctgtctctctg------------- 167
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 252 cagattcaaactcatattctttcttttagtgtttgtctgtctctctgtaatgtggcacat 193

                                                                       
Query: 168 ------taatgacatatgggtgtgcccttcccccagtcttgagcaggctaaacagacctc 221
                 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgaaaataatgacatatgggtgttcccttcccccagtcttgagcaggctaaacagacctc 133

                                                                       
Query: 222 cagtgcttgccacaatgcctttaacaacccaggtggagtcattgtcttactgcctgcacc 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cagtgcttgccacaatgcctttaacaacccaggtggagtcattgtcttactgcctgcacc 73

                                                                       
Query: 282 tgcaatttcctacaggaacttagaagaatagattgcccactgagcttgctttgcaattta 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tgcaatttcctacaggaacttagaagaatagattgcccactgagcttgctttgcaattta 13

                       
Query: 342 atcaagctaaaa 353
           ||||||||||||
Sbjct: 12  atcaagctaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)