BAC Information

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BAC

Clone NameMSMg01-433G04
Chromosome16 (Build37)
Map Location 26,054,472 - 26,054,711
singlet/doubletsinglet
Overlap geneLeprel1
Upstream gene5430420C16Rik, Trp63, LOC100043571
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G04.T7 (MSMg01no433_g04.b1)MSMg01-433G04.TJ (MSMg01no433_g04.g1)
ACCAG525180AG525181
length768852
length of high quality
(start - end)
240 (69 - 308)65 (67 - 131)
definitionCHROMAT_FILE: MSMg01no433_g04.b1 PHD_FILE: MSMg01no433_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:27 2005CHROMAT_FILE: MSMg01no433_g04.g1 PHD_FILE: MSMg01no433_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATCAGATTCTTAGGGTGTTTACATTTAGCTACATAATGACAGGCTT
AAATTTAAATAGACCTTAGATTAAAATCAAAACAAAATAGTTTGGATTAT
ATAGTCTTAATAACAAAATTTGAGGATACACTTAGGCAATTATGTTCTGA
CTTCTTTTGTTGAATGTGTCAGCAGATAAGGCTTTGCCGGAGAAGCAAAG
CTGACAGCTGCTACTCAAGTACCATCAAGCCATGGATATTGATGAGGGTG
GACTTGGTGGATTGAATTTTTTCATACGTCATAACTTGACACCGAGATAA
TGAACATATCATATACCTCTCAGGTTTTATGTCCACCTGTTTGTACCCCT
GATTTCTTCTTTCTACCCCCTTATGTATTGTTTTTTTTTTTCCCCCTCCT
TCTATTTTTTTTTCCCCGCCCGCCCTTTTTTTCTTTCTCCCTTTTTTCCC
CCCCCCTACGCCTTTTTTGCTTTTCTCTTCTTTTTTCTTTTTCCCCCCAC
TCTTGTTTTCCCCCCTCCCCCCCTTTTTTTCCTCCACCCCTTTTTCTTCC
CCCCTTCCTTTCTCAATCCCCTCTTTTTTATTTTTTCCCCCTTTCTTTTA
TTCTTTCCCACCATTTTTTTCCCCGCCACTTTTTTACCCTTCGCTTCTTT
TTCTTTCTCACTCCTTCTGTTTTCTTCTCCCTCTCTCCACCTCCTTTTTT
TTCCCCACCTTTTTTCGT
GTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTGGGTGGGTGGAGGAACACCCTCATAGAAGCA
GGAGGAAGGAGGATGTGATAGAGTGTTTCTGCCACTCTTCCTTTCTCCTC
TTTCTTTTTTCTCTCCCTTCTTTCCTCCCTCTCCTCTCCTTCCTCCTTTC
TTCTCCCTCTTTCTCTTTTCTCCTCCTCTCTTTCTTCCCTCTCTCCCCTC
TCCTTTTCCCTTTTCCTCCTTCCTTTTCCTTCCTTCCTCCTTCTTCCTTT
TTCTTTTTCCCTCTCTCCCTCTTTTTTCTTTTCTTTCCCCTTCTTTCCTC
CCTCCCTCCCCCTTTTTTTCTTCCCTCCCCTTTCCCCCTCCTTCCTCTTC
CCCCTCCTTCCCCCTCCTCCCTTCTTTCCCCTCCTCCCCTCCCCTTCTTC
CCTCCCCTCTCCCTTCTCCTCTCCCTTCTCCTCTTCCCCCTCCTTCCTTC
CCTTCTTCTCTCTCCTCCTTTTTCCTTCCTCCCTTCTCCTTCCTTCTCCC
CCTCCCCTTTCTTCCTCCTCCCCTTCCTCCCTTCTTCCCCTTCTTCTTCT
TTTTTCCTTTTCCCCCTCCCTTCCTTTCCTCTTCCTTTCCCTTTCCTACT
TTCTCCTCCTTTTCTCCCCCCTTCCTTCCCTTTTCTTTCTTTCTTCCCTT
TCCCTTCTTTCCTCCTCTTTCCTTTTTTCCCGCCCCCCCCTCTTTTCCTT
TCCTTCTCCTCTCCTCCCCTCTTTCCCCTTTCCCTTTTCCCTTCCTCTCC
TCCTTTCTCCATTTACTTTCCCTTTCCCCCCTTTCCCTTCTTCTTTTCCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g04.b1 MSMg01no433_g04.b1 CHROMAT_FILE:
MSMg01no433_g04.b1 PHD_FILE: MSMg01no433_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:27 2005
         (240 letters)



>mm_chr16_26054272_26054911
          Length = 640

 Score =  395 bits (204), Expect = e-114
 Identities = 231/240 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtttacatttagctacataatgacaggcttaaatttaaatagaccttagattaaaatc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 201 gtgtttacatttagctacataatgacaggtttaaatttaaatagaccttagattaaagtc 260

                                                                       
Query: 61  aaaacaaaatagtttggattatatagtcttaataacaaaatttgaggatacacttaggca 120
           |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 261 aaaataaaatagtttggattatatagtcttaataacaaaattcggggatacacttagtca 320

                                                                       
Query: 121 attatgttctgacttcttttgttgaatgtgtcagcagataaggctttgccggagaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 321 attatgttctgacttcttttgttgaatgtgtcagcagataaggctttgcaggagaagtaa 380

                                                                       
Query: 181 agctgacagctgctactcaagtaccatcaagccatggatattgatgagggtggacttggt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 agctgacagctgctactcaagtaccatcaagcaatggatattgatgagggtggacttggt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)