BAC Information

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BAC

Clone NameMSMg01-433I23
Chromosome16 (Build37)
Map Location 30,090,821 - 30,091,201
singlet/doubletsinglet
Overlap genenone
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1
Downstream geneEG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I23.T7 (MSMg01no433_i23.b1)MSMg01-433I23.TJ (MSMg01no433_i23.g1)
ACCAG525314AG525315
length810785
length of high quality
(start - end)
---390 (70 - 459)
definitionCHROMAT_FILE: MSMg01no433_i23.b1 PHD_FILE: MSMg01no433_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:41 2005CHROMAT_FILE: MSMg01no433_i23.g1 PHD_FILE: MSMg01no433_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCCGCGGAATTCAA
AACTACTCGGGCTAGCATGAGACCCTATCTGAGGAGGAAGAGGAGGACGG
AGNTGNCTNTTTTGCCCACAGTAGTCTAGTCCTCCTCTCATCTCGGAGCA
CTACCTACTTATGGTGGGGTCATCCCTATCTGCGATGACCCACAGAATGC
GCGCCGCTTGATAGACTAGCGATGCTGCGTCCGGCCCACGATTTGTACGC
TGCTTGCCACTAGGAGAAGACGGGAGGGGGGGGCGGCCCCACGCAGCCGA
CAGTTTTTCTTTTCCGCCCCNAGCGAAGCGAGACCCGGACGTGAGTTTCT
TCCCCTCTCCCCACAGAGGCGGCGCGAGCAGGGCCAGCCCCCGCCCGGGC
GCGAGGCCGACACCACCAAACCCTTCTTTTATTGGAGAGCGACATAATGC
AGAATATAAGCCTTATGGGTCGTCTGGATGCTGCGCCCTACCGTGCCCTT
CTCTATTACATCGTTTATATATGCTACCTACACTGCTTCACAATTGTCAT
CGCCATTCCTTCTGATATCCCATTTACCTTTTGACGACCCATCCCACCAC
TGCCTCTCTGACCAACTTCCCCTACGCCCACACCCGTTTTTTAAACCTTT
CCCTCCTTCCACTTATTACCCCACCGTCCCACATAATAACCCCATCCCAC
CTCACAATGATGAACACTACCTCCACCTTTACCACCTCGTGTGCTCACCC
ACGCTCTCATACTCTTTCTCCCGCCTCAACGCGCACACGGCCTGCCATCC
ACTTNCTCTN
ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCACCTCAAGTGATTTTCCTGCCTCAGCTG
CCTGAGTAGCTAGGACTATAGGTTCAGACTACTACAGTCAGATTCCAAAC
TGTAATATTCGAGGATGGGTTTTCCACAGTTTGGAGACCCCAAAATCTTT
TTTGTCAAAGGTCCAATAAAGAAACTTCACACAGACTCAGTACATACAGA
AAAGGGGATTTACTGCATACTTTAAAAAAAAAATACATTCTTATCGTAGC
ATTCATTATGAATTCTACTCTGGGCTGTTGTGACTAATAAAACAGTAAAG
CTGAGATTATAAGGGACAGTTTCTGGTTTATCCGCCTCAGCATCTGGNAA
ACTTAGGCACTGTGTTTTGACACATTCTTCCAGGTTGCAAAACGGGACTT
TTTCTTAGAATGTCCTTGAGTAGAGGCTACACTTCTAGTTACCAGAGTAA
CAGCTTTCTCCCCAGGGTCCCCCTGTAATGGAGCCCAGAAGGCTTTGCCT
CCGGTTTTCCGGTTTTTTTTTGCTCTCTTCATTCACTTTCTCTGCGGGGC
GCCTTAGGATATTTCCTTCCCCTCCTGCCTCCTGCTTATTTTCCTTTTTC
TCTTCCCCCTCCTTCCTTTTTCCTCTATTTCTCTTGTCCTATTTCCTCTT
TTCCCTATTCTTTCTCCTTTTCCCGCTTTTTCCTCCTTCCTTTTCCCTCC
TTTTATCCCTTTCTTTTTTTTCCTTCTCCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i23.g1 MSMg01no433_i23.g1 CHROMAT_FILE:
MSMg01no433_i23.g1 PHD_FILE: MSMg01no433_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:41 2005
         (390 letters)



>mm_chr16_30090444_30091233
          Length = 790

 Score =  663 bits (343), Expect = 0.0
 Identities = 374/390 (95%), Gaps = 9/390 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacctcaagtgattttcctgcctcagctgcctgagtagctaggactataggttcagac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 758 ctcacctcaagtgattttcctgcctcagctgcctgagtagctaggattataggttcagac 699

                                                                       
Query: 61  tactacagtcagattccaaactgtaatattcgaggatgggttttccacagtttggagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tactacagtcagattccaaactgtaatattcgaggatgggttttccacagtttggagacc 639

                                                                       
Query: 121 ccaaaatcttttttgtcaaaggtccaataaagaaacttcacacagactcagtacatacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||         |||
Sbjct: 638 ccaaaatcttttttgtcaaaggtccaataaagaaacttcacacagact---------cag 588

                                                                       
Query: 181 aaaaggggatttactgcatactttaaaaaaaaaatacattcttatcgtagcattcattat 240
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 587 aaaaggggatttactgcatacttttttaaaaaaatacattcttatcgtagcattcattat 528

                                                                       
Query: 241 gaattctactctgggctgttgtgactaataaaacagtaaagctgagattataagggacag 300
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattcaacactgggctgttgtgactaataaaacagtaaagctgagattataagggacag 468

                                                                       
Query: 301 tttctggtttatccgcctcagcatctggnaaacttaggcactgtgttttgacacattctt 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 467 tttctggtttatccgcctcagcatctggtaaacttaggcactgtgttttgacacattctt 408

                                         
Query: 361 ccaggttgcaaaacgggactttttcttaga 390
           ||||||||||||||||||||||||||||||
Sbjct: 407 ccaggttgcaaaacgggactttttcttaga 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)