BAC Information

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BAC

Clone NameMSMg01-433L03
Chromosome16 (Build37)
Map Location 51,782,750 - 51,783,068
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433L03.T7 (MSMg01no433_l03.b1)MSMg01-433L03.TJ (MSMg01no433_l03.g1)
ACCAG525418AG525419
length760733
length of high quality
(start - end)
322 (36 - 357)438 (69 - 506)
definitionCHROMAT_FILE: MSMg01no433_l03.b1 PHD_FILE: MSMg01no433_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:51 2005CHROMAT_FILE: MSMg01no433_l03.g1 PHD_FILE: MSMg01no433_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTT
GTATACGTTCCATCTCCTTGGTCTACTACCCTCCAGTTGCTATTTTGGCC
ACAATCTGGAAACTCATATTCGGTGATTTAAAGTCAATTTCTTTAATTAC
CAATGATTGCTTACTTATTGGTTTCCTAGTTTCTCACTCTGAATTTTCTA
TAAATCAGGTGTTACACTTTGTAAATGGATTCTCTAGTTTTCTTAGGGTT
ACTGTAAAAATATTGTATCTTATGATTTAAATGAACCTAATTTGATCTAT
TTTTAAATATTACTTTATCTTTCAAATGTTTTTGAACATGGTTTCTTTGT
ATAACAGCCCTGGCTATCCTAGAACTCACCATGTATACCATGCTAGCCTC
ATAACTCACAGATTCGCCTGTCTCTCTACCAATATTTAGAATTACAGATA
CCCACCGCCTTTGTCTTCTGTATTTCCTCCATTGAGCATTTCGCTTTCCC
TCTACTAATGATGAGAACATATTGTTCATATGTTTCTCCTTACACTGGCC
CTTCATGTTTATCCTTCCCATAATACAGATACTTTACCCCCAACTTCGTT
GTTCTTTTCCATCAACGGCTCTTTTTTACCTCCCCCCTCCATTTTTCCCG
TCTCCTCTTACTACCCTTTTTCTCTTTTCCTCTCTTTTCATTCATTTTAT
CCCTTCTTTCCTTTATCCCCCTCCCCTCTTTTTTACTAACCTCATTCTTC
TCCTATATCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAACTTGCGAATACTGAATAGCTGAGAAGAT
GGGGGAGATACAGAGACTGTGTGGAGCAGAGACTGAAGGAAAGGCCATCC
TGAGACTACTCCACTTGGGGATCCATCCCATATATAGTCACCAAACCCAG
ATACTATTGTGGGTGCCAACAAGTGCTTGCTGATAGGACCCTGATATAGC
TGTCTCCTGAGAGGCTCTGCCAGTGCCTTACAAATTCAGAGGTAGATGCT
CCAGACAACTATTGAACTGAGCACAGGGTCCCTGATGTGAAAGAGACCCA
ATAGAGAAAGGACCCAAGGAGCTGAAGGGGTTTGTAGCCCCATAGAAAAT
ACAAACCATATGAACCAACCAGTGTCCCCAGAGCTCCCAAGGACTAAACA
GCCAACCAAAGAGTACACATGGAGGGACCCATGGCTCCAGCTGCATATGT
AGCAGAGAATGGTCATCACTGGAAGGAGAGGCCCTTGGGCCTATGAAGGA
TGGATACCCCAACGGAGGGGAATGGCTGTACCAGTAAACCGCAGCGGATG
CGTCTGTGATCCTCCCCCATTTTCCCTTCCCCCTTCTTTATCTCCTCCCT
CCTTTCTTTTCCTTCCTCTTCCTCTACCCCCTTTCTTGTTTCCTCTCTTC
TTTGTCCCCCTTCCCTTTTTCCTTCTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_l03.b1 MSMg01no433_l03.b1 CHROMAT_FILE:
MSMg01no433_l03.b1 PHD_FILE: MSMg01no433_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:51 2005
         (322 letters)



>mm_chr16_51782547_51783268
          Length = 722

 Score =  578 bits (299), Expect = e-169
 Identities = 314/319 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctttgtatacgttccatctccttggtctactaccctccagttgctattttgg 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttgcagacgttccatctccttggtctactaccctccagttgctattttgg 263

                                                                       
Query: 64  ccacaatctggaaactcatattcggtgatttaaagtcaatttctttaattaccaatgatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacaatctggaaactcatattcggtgatttaaagtcaatttctttaattaccaatgatt 323

                                                                       
Query: 124 gcttacttattggtttcctagtttctcactctgaattttctataaatcaggtgttacact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcttacttattggtttcctagtttctcactctgaattttctataaatcaggtgttacact 383

                                                                       
Query: 184 ttgtaaatggattctctagttttcttagggttactgtaaaaatattgtatcttatgattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtaaatggattctctagttttcttagggttactgtaaaaatattgtatcttatgattt 443

                                                                       
Query: 244 aaatgaacctaatttgatctatttttaaatattactttatctttcaaatgtttttgaaca 303
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 444 aaatgaacctaatttgatctatttttaagcattactttatctttcaaatgtttttgaaca 503

                              
Query: 304 tggtttctttgtataacag 322
           || ||||||||||||||||
Sbjct: 504 tgatttctttgtataacag 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)