BAC Information

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BAC

Clone NameMSMg01-434O01
Chromosome16 (Build37)
Map Location 40,005,952 - 40,006,340
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf11, LOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O01.T7 (MSMg01no434_o01.b1)MSMg01-434O01.TJ (MSMg01no434_o01.g1)
ACCAG526313AG526314
length764772
length of high quality
(start - end)
390 (38 - 427)326 (68 - 393)
definitionCHROMAT_FILE: MSMg01no434_o01.b1 PHD_FILE: MSMg01no434_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:25 2005CHROMAT_FILE: MSMg01no434_o01.g1 PHD_FILE: MSMg01no434_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
AGATTATTTAATATGTACTTGTTAGTGTGTTTAGTGAGAGCAGGTTTATG
AAATGCAAGAAAAAAAAACAAGGACAAAGAAACATATCATAGTTACTCTC
TTTTTTTCCCCCTCCCTAGACAGCTGACATGATGTCATCGTCACATAAAC
CAAACAAGATAGTATTACTGTGGAGGTATAAAGGGTGCCTTCGTGTGAAT
CAGGATCATATAATTAATATAATTCTTTATAGACCACATGTTGAGGACTA
TTTGTCAAAGGAGATAAATTCTGACATGAACTCCACTAGTCCTTCTTCTC
CCACCAGTGCAGTTCTTATTACTGACAGCGTGGGCAAGATCCGTGGATGT
GGTTAGTGTTGCGGCCTTCTATCCCTTTTCTAAGTTCCCCTAGATCCCAT
CGTTCCTCATTCTCATGATATCACCATCAAGTCATCCCAGCAAATACCCA
TATCCGTCATAACCCCTTTAGCCCACGGTCGCTTCCTTTGACTAGCATTG
ATAATATGCTTAATCTGCTCTCTGACTCTTATCTCACTAGCATTTCCTGT
CTTTTTTCCTATCTCTCCGTTTCTTATTACCTTTTCCTCTCCTTTATTCC
CTTTCCTAATCTTCGCTAATCATGTTTTTCTTATTTTCTTGCGGTTCTTC
TATCTACATTCTACCTTTTATTGTCATTCTCTTCCCCACCAAACCCCATA
CTCTACCCCGCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTCTACCCTATTTTTTAATAGG
GTTATTTGGTTCTCTGAAGTCTAACTTTTTCAGTTCTTTGTATATATTGG
ATGTTAGCCCTCTATCAGATGTGAGATTGGTAAAGATCTTTTACCAATCT
TTTGGTTGCCATTTTGATTTGTTTGAGTTAATTTTATATCCAACCGCTTT
GTTGAAGTTGTTTCTCAGGTTTAGGAGTTCTCCATTTGAATTTTTGGGAT
CACTTAAATATACTATTATATTGTCTGCAAATAGTGATAATTTGACTTTT
TCCTTTTCAATTTGGCCACCTTTTATTTTCTATTTTCTCTAGCTGCAACT
TTAGCACTATATAGAATAGATAGGTAGAGTGTGCTTCTGATTTTGTCTGC
GACCTTCTTTTTTTGCCCATGGTCCCCACCTCCTTCTCTTTTTGAAATAA
CATGTGCTTCTTCCTTTCATGTCCCCCACTTTCATTTTCTTCTTTCATCT
CTCTTTTCAATACCTCTAGCTGCGTCCCCTTTATATTTTTTTTCTTCTTC
TTCTCATCTATACTATTTGCGCGCATCTTTTCTGGTCACTTTCGACTTTT
GATGTCTCCTCACTGGTTCTCGTTTCATCGGGTTACTTTCTGTTTGTTGT
TTTTCTCCTCTTTCTTTCCTATATCCTCGCTCTTTTTTTAATCCCCTTTC
CCTCTCTCTCCAGTCGTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o01.b1 MSMg01no434_o01.b1 CHROMAT_FILE:
MSMg01no434_o01.b1 PHD_FILE: MSMg01no434_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:25 2005
         (390 letters)



>mm_chr16_40005748_40006540
          Length = 793

 Score =  677 bits (350), Expect = 0.0
 Identities = 379/390 (97%), Gaps = 5/390 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtagattatttaa---tatgtacttgttagtgtgtttagtgagagcaggttta 61
           ||||||||||||| ||||||   |||||||||||||||||||||| ||||||||||||||
Sbjct: 593 gaattctgtagatcatttaattgtatgtacttgttagtgtgtttaatgagagcaggttta 534

                                                                       
Query: 62  tgaaatgcaagaaaaaaaaacaaggacaaagaaacatatcatag-ttactctcttttttt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 533 tgaaatgcaagaaaaaaaaacaaggacaaagaaacatatcatagtttactctc-tttttt 475

                                                                       
Query: 121 ccccctccctagacagctgacatgatgtcatcgtcacataaaccaaacaagatagtatta 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccccctccctagacagatgacatgatgtcatcgtcacataaaccaaacaagatagtatta 415

                                                                       
Query: 181 ctgtggaggtataaagggtgccttcgtgtgaatcaggatcatataattaatataattctt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 414 ctgtggaggtataaagggtgccttcgtgtgaatcaggatcatacaattaatataattctt 355

                                                                       
Query: 241 tatagaccacatgttgaggactatttgtcaaaggagataaattctgacatgaactccact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatagaccacatgttgaggactatttgtcaaaggagataaattctgacatgaactccact 295

                                                                       
Query: 301 agtccttcttctcccaccagtgcagttcttattactgacagcgtgggcaagatccgtgga 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 294 agtccttcttctcccaccagtgcagttcttattactgacagtgtgggcaagatccgtgga 235

                                         
Query: 361 tgtggttagtgttgcggccttctatccctt 390
           ||||||||||||||||| ||||||||||||
Sbjct: 234 tgtggttagtgttgcggtcttctatccctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 793
Length adjustment: 9
Effective length of query: 381
Effective length of database: 784
Effective search space:   298704
Effective search space used:   298704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)