BAC Information

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BAC

Clone NameMSMg01-435C08
Chromosome16 (Build37)
Map Location 75,019,891 - 75,020,267
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435C08.T7 (MSMg01no435_c08.b1)MSMg01-435C08.TJ (MSMg01no435_c08.g1)
ACCAG526518AG526519
length778808
length of high quality
(start - end)
379 (49 - 427)371 (76 - 446)
definitionCHROMAT_FILE: MSMg01no435_c08.b1 PHD_FILE: MSMg01no435_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:46 2005CHROMAT_FILE: MSMg01no435_c08.g1 PHD_FILE: MSMg01no435_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGTTTCCCTACCGAATGGCAGAGAAGCACTTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGAATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGGACATAGTACTACTGTATGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCTA
TATGCCCCTCAACAGAGGAATGGATACAGAAAACGTGTTACATCTTACAC
ATGTAGCACTACTCATCTATTAAAATGAATGATTCATTGATTTCCTAACC
TTATGGATGTATCTGGAGGGCTTCTTCTTGAGTGAAGTATTACCCTCCCC
TCCATATCTTCCTCTTATGTTTCTCTTTGCTTTTTCGCCTTTTATCCTCT
TCCTTTTCTCTCCCTCCTTCTTAATTCCTTCTCTTTTCTTAATTCTTTTT
ATTCCCCTTCTTTATCCTATTCCTCCCCCGCCTCCTCTTACTATCTTTTT
CCCCTATATTGCCTCTTTATATCATTCG
TCGATGAAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGCACTAGGCACACTTAGCTAA
TTCTCCCAGAGGTTCTGATTTCTGCTTTAATTATTTTCAGTTATTTTGTC
CCCTGTAGCTCTGTTCTAAGACGTAGATCTATTTTGTATCTGAAAATAAT
GAATTTTAAAGCTCATATGTATGATACTTCCAGATATCTATTTGTACTTT
TTTACTAGAAAAGACAGACAGGACAACACTTATCACTTCCTAATTAAACT
CTAATTTATCCAAGGTGATACTTATTGTTACTTTTTATTACTTTGCCTTT
GAAAATGGGATTTATGATTCAGAAGAAACTGAATTGATTTTATGATATCT
ATTAAATATTGCCTCCCCCCGCTTTTTTTGCCTCAAATGTATTTCTTGCT
ATTTGAATATGTTATTCTTTATTATATAATTATATTTCAGTTTTTCTTTC
CCCTCTTGATTTATATTCACCCCCCTCTCTAACGTGCCTGTTCTTTTGTT
TTTCGTCTCTTTTTTTTCTTCTTTTTTTTTCACTCCTTATTATCCACATA
TCACCTTTTTTTTTTCCCCCCTCTCTTTTCTCCCCTATCCCCCTTCTTTT
TTCTCTCCCCCCCCTCCTTTTCTATATTTCCTATATTTTTTCTAACTTTT
TCTTCCCTTTTTTCTATTTTTTTTTCTATCATGTCCTCCTTATAACCATT
TTTCAATCCTACTCTTATATCAACATATTATATACCCATCATTCACTTCT
TATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_c08.g1 MSMg01no435_c08.g1 CHROMAT_FILE:
MSMg01no435_c08.g1 PHD_FILE: MSMg01no435_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:46 2005
         (371 letters)



>mm_chr16_75019726_75020495
          Length = 770

 Score =  646 bits (334), Expect = 0.0
 Identities = 364/378 (96%), Gaps = 8/378 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgcactaggcacacttagctaattctcccagaggttctgatttctgctttaattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttttgcactaggcacacttagctaattctcccagaggttctgatttctgctttaattatt 483

                                                                       
Query: 61  ttcagttattttgtcccctgtagctctgttctaagacgtagatctattttgtatctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttcagttattttgtcccctgtagctctgttctaagacgtagatctattttgtatctgaaa 423

                                                                       
Query: 121 ataatgaattttaaagctcatatgtatgatacttccagatatctatttgtacttttttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ataatgaattttaaagctcatatgtatgatacttccagatatctatttgtacttttttac 363

                                                                       
Query: 181 tagaaaagacagacaggacaacacttatcacttcctaattaaactctaatttatccaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tagaaaagacagacaggacaacacttatcacttcctaattaaactctaatttatccaagg 303

                                                                       
Query: 241 tgatacttattgttactttttattactttgcctttgaaaatgggatttatgattcagaag 300
           ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgatac-gactgttactttttattactttgcctttgaaaatgggatttatgattcagaag 244

                                                                       
Query: 301 aaactgaattgattttatgatatctattaaatattgcctccccccg-------ctttttt 353
           |||||||||||||||||||||||||||||||||||||||||||  |        ||||||
Sbjct: 243 aaactgaattgattttatgatatctattaaatattgcctccccttgtttttttttttttt 184

                             
Query: 354 tgcctcaaatgtatttct 371
           |||| |||||||||||||
Sbjct: 183 tgccacaaatgtatttct 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space:   275482
Effective search space used:   275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)