BAC Information

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BAC

Clone NameMSMg01-435G19
Chromosome16 (Build37)
Map Location 73,290,201 - 73,290,536
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318
Downstream geneLOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G19.T7 (MSMg01no435_g19.b1)MSMg01-435G19.TJ (MSMg01no435_g19.g1)
ACCAG526732AG526733
length781789
length of high quality
(start - end)
440 (41 - 480)338 (70 - 407)
definitionCHROMAT_FILE: MSMg01no435_g19.b1 PHD_FILE: MSMg01no435_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:09 2005CHROMAT_FILE: MSMg01no435_g19.g1 PHD_FILE: MSMg01no435_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGGATCCGCGGAATT
CCTTTGTGATTGCCGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATC
CATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTA
CTCCATTGTGTAGATGTACCATATTTTCTGTATCCATTCCTCTGTTGAGG
GGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAATGCTGCTATG
AACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATA
TATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT
TTCTGAGGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAC
TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCA
TCTGCTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGTTGTGAGGC
GCAATTTTACCGTTGTTTTCGTTTCCTTCCTCCCCCTTTCCTTTCCCCCT
CTCTTTTCCTTTCCCCGTCCTTTCCCCCCCTTTTTTCCCTTCCCTTTTTT
CCCCTTTTTTTCCTTTGTGCCTTCTCTTTTCTCCCCCTTCTCACATTTTT
TGTTCCCTCTTTCTTCCTTCCCTTTTCTCTTCCCTCCTTTCCCCCCCTCC
CTTTTTCTTTCTTTCCCCTTTCTTTTTCCCCCTCTTGTTCCCACTCCCCT
TTTTCCCCTTTCCCCTTTTCCCTTTTTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCATGTGACTGACTGCCATGATCACTATGG
AGACAGGGAGGGAGTTAGCTCTACTTTGGCCATCTCAAATCTATGAGATT
TCTGGGGTGTGAGCATGCTCCACTTCACCAGTCCTATGCCCATTCCCCTG
ATGGCATGGCCCTACACCTCAGTTCTGTTCTTTTATATCCTGATAACACA
CAACCTGAAACTAGCTGAAAGGAGAGCCATTGCTCACGATTCTTAAATCA
GTGGAGAAATAGACCTTTTTTCTAGAAGGTTTGGCTCTCTAAGGAGGGTA
GGTTTCATACTTTTGTGTGGTGTAGAGGAAACATATTTTATATCTATATA
TAGTGCAACACACCCCCACCACAAAACTCAATGCTGTATATAATACCCAC
CTTAACGTTCTTATTTCACCTTCTACCACTTTTTTTGACCCCGCATCCTA
TTTTATTAGCATGATCTTCTTATTACACCTTTCTGACTCTTTTCCCTTTT
TGTTTTTTTTTTCCCCTTCTTATTTCCCTTTTTTCCACCCCCTTTTTCTT
TTTTTTTGCACCCTGTCTCGATTTTTGTCCCACCCCCCCACCTTATTTAT
TCCTTTCTTTTTTCCCTTTTTATTCCATCCTATTTATTTTCTTTTTTTAA
CAAATATATTTCCCTCTTTTCTTCCCTCTTTTTTTTTTACTCTCTCTCCC
CCTCTTTTTTTTTCCTCCACTATCACTTTTTTCATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g19.g1 MSMg01no435_g19.g1 CHROMAT_FILE:
MSMg01no435_g19.g1 PHD_FILE: MSMg01no435_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:09 2005
         (338 letters)



>mm_chr16_73290001_73290738
          Length = 738

 Score =  553 bits (286), Expect = e-162
 Identities = 323/342 (94%), Gaps = 12/342 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatgtgactgactgccatgatcactatggagacagggagggagttagctctactttgg 60
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 536 cccatgtgactgactgccatgatcactatagagacagggaaggagttagctctactttgg 477

                                                                       
Query: 61  ccatctcaaatctatgagatttctggggtgtgagcatgctccacttcaccagtcctatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccatctcaaatctatgagatttctggggtgtgagcatgctccacttcaccagtcctatgc 417

                                                                       
Query: 121 ccattcccctgatggcatggccctacacctcagttctgttcttttatatcctgataacac 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccattcctctgatggcatggccctacacctcagttctgttcttttatatcctgataacac 357

                                                                       
Query: 181 acaacctgaaactagctgaaaggagagccattgctcacgattcttaaatcagtggagaaa 240
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 356 acaacctgaaactagctcaaaggagagccattgctcacgattcttaaaccagtggagaaa 297

                                                                       
Query: 241 tagacctttttt------ctagaaggtttggctctctaaggagggtaggtttcatacttt 294
           ||||||            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tagacc------aaagcactagaaggtttggctctctaaggagggtaggtttcatacttt 243

                                                     
Query: 295 tgtgtggtgtagaggaaacatattttatatctatatatagtg 336
           |||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 242 tgtgtgatgtagaggaaacatattttatatctatacatagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)