BAC Information

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BAC

Clone NameMSMg01-435I10
Chromosome16 (Build37)
Map Location 25,199,857 - 25,369,144
singlet/doubletdoublet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435I10.T7 (MSMg01no435_i10.b1)MSMg01-435I10.TJ (MSMg01no435_i10.g1)
ACCAG526810AG526811
length761807
length of high quality
(start - end)
159 (87 - 245)194 (76 - 269)
definitionCHROMAT_FILE: MSMg01no435_i10.b1 PHD_FILE: MSMg01no435_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:18 2005CHROMAT_FILE: MSMg01no435_i10.g1 PHD_FILE: MSMg01no435_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,368,986 - 25,369,144)(25,199,857 - 25,200,046)
sequence
TCTTTATTTGTTTTCGTTAAACTAATCACTATTTCCAGAGGATCCGCGGA
TTTCTCCTTTTTCCCATCCACCAGCCCAGATCAAAACCCTTGTGATTTTC
CAACCCTACTATTAATGAGGTTACCTCCTAGCTAGCCACTTTCTCTGATT
TAATATTTTCAACCAAACCATATCCCATATTGTTACTACTATCGTTTCAA
GGGAAAATATAATGGTTTTAGGATCCTCCCACCCAGAACTCTCAACACCT
TGTCAGGATATGACTAAACTCCCAATTCTTCATCCTATCATCTAAGATCA
TTCAGAAATTTCTAATTTACCTTTAAAACAGCTGATCCCTAAGATTTGGT
AGACTTGGTACATCACCATAGCCATATGTCACCTATTCACCACTCCTGTG
ACTGCTGTCTACAGGTGACTCTACAGGTATCTGTCTATCTTACCCCCTCC
TGAGGTTCTCTTCATTCCATCTATAACTTATTCTCTTTCTTTTCTCCCGA
CCATGATCTGTTTTCTCTTTATCCGTCTTTCATACCTGATCCTTCTTATT
CTCTCGCCGCCAGTGTGTTTTCACTTTTTTTCTTCTGCCCTCTTCCTTTC
TCCCTAACTCTTTACCGTTTCTTTTTTCCCTTCTCCCCTTCTTCCTTTTT
CCTCTTCTTTTTGCTTTCTCCTCCATGAATGATCTTTCTTTTCCCATTAT
TTCTCTCTTCCTCCACTCTACCTATTCTCTCTATCTCCCCTTCTTCCCCT
TTTCTACATCN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGGCTCAACTTAAATTCACTTC
AAGAGCGAAGGAGAATTCAGGGGAGGTAAACCTCCCAGTAAAGACTTGGT
GGCTGTTTGGTATTAAGTGACATAGTTTGCTTCTGCCAAGTGCACCATCA
TCCATGAGTGACAGAAGGAGGCATGCAGGTAAAAACATGAAGGATGCATA
TTATCATGGGAAGGATGTGGGCACATCTGGTCTGTAGAACCATGCTGTTT
GGTTTAGGAGACCTGTTTTCTGTTTTGGAATTCCCCCTTCCTGGCCGCGC
ATTTTTATATTTATCACCACCTACCCCCTCTTGTTTTGAGGACGTTTAAT
CTATCTTAATTTTGAACCCCCCCTCCTTTCTTTTTTTTTTTATTACCCTT
TTTTCTTCACCTCTCCTTTTACCTCTCCTTCTATTCCTCTCTTTTATTCT
TTTCCTTCTTTCCCCTCCTCTTTTTTTATTTTTTTCCCCTTTTCCCACCT
TAACATTCTACCTTCCTCTTCCTTTCTTTTTTTTTTTTTCTCTTCTTTCT
CCCCCTCTTTTTTCCTTCCACCCCCTTTTTTATATCCTCCTCCTTTTATT
CTCATCCTTATCCCATATTTAACCCCCTCCTTCATTTTTTCTCTCTCCCC
CCCTTCCCTCTCCTCTCTTCTCCCTCTTTTTTTTTTTTTTTTCTCTCATC
TTTCACTATTTTTCCATCCTCTTTACCTTTCTTGTTCGCCTTTTTCCTCT
TTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_i10.b1 MSMg01no435_i10.b1 CHROMAT_FILE:
MSMg01no435_i10.b1 PHD_FILE: MSMg01no435_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:18 2005
         (159 letters)



>mm_chr16_25368786_25369344
          Length = 559

 Score =  284 bits (147), Expect = 1e-81
 Identities = 156/159 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttgtgattttccaaccctactattaatgaggttacctcctagctagccactttctct 60
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 359 cccttgtgatttttcaaccctactattaaggaggttacctcctagctagccactttctct 300

                                                                       
Query: 61  gatttaatattttcaaccaaaccatatcccatattgttactactatcgtttcaagggaaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 299 gatttaatattttcaaccaaaccacatcccatattgttactactatcgtttcaagggaaa 240

                                                  
Query: 121 atataatggttttaggatcctcccacccagaactctcaa 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atataatggttttaggatcctcccacccagaactctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no435_i10.g1 MSMg01no435_i10.g1 CHROMAT_FILE:
MSMg01no435_i10.g1 PHD_FILE: MSMg01no435_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:18 2005
         (194 letters)



>mm_chr16_25199657_25200250
          Length = 594

 Score =  313 bits (162), Expect = 3e-90
 Identities = 183/190 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggctcaacttaaattcacttcaagagcgaaggagaattcaggggaggtaaacctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cacaggctcaacttaaattcacttcaagagcgaaggagaattcaggggaggtaaatctcc 260

                                                                       
Query: 61  cagtaaagacttggtggctgtttggtattaagtgacatagtttgcttctgccaagtgcac 120
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cagtaaagacttgttggctgtttggttttaagtgacatagtttgcttctgccaagtgcac 320

                                                                       
Query: 121 catcatccatgagtgacagaaggaggcatgcaggtaaaaacatgaaggatgcatattatc 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |
Sbjct: 321 catcatccatgagtgacagaaggaggcatgcaggtaaaaacataaaggatgcataaaagc 380

                     
Query: 181 atgggaagga 190
           ||||||||||
Sbjct: 381 atgggaagga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)