Query= MSMg01no436_b22.b1 MSMg01no436_b22.b1 CHROMAT_FILE:
MSMg01no436_b22.b1 PHD_FILE: MSMg01no436_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:06 2005
(573 letters)
>mm_chr16_28336833_28337805
Length = 973
Score = 940 bits (486), Expect = 0.0
Identities = 551/574 (95%), Gaps = 9/574 (1%)
Strand = Plus / Minus
Query: 5 gaattccacaaatgtatgaaggatgaaattaagttaggagaactttgattctttattgat 64
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 958 gaattccacaaatgaatgaaggatgaaattaagctaggagaactttgattctttattgat 899
Query: 65 gatgttaggtctgaaagctggccatatgttgtgtgtccagcaatgggctaaacttacaca 124
||||||| |||||| |||||||||||| || |||||||||||||| | ||||||||||||
Sbjct: 898 gatgttatgtctgagagctggccatat-tt-tgtgtccagcaatgtgttaaacttacaca 841
Query: 125 atca-tgatcaaacttaacaactgtactcttctttttttcttcttcc---tcttcctcct 180
|| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 840 at-agtgatcaaacttaacaactgtactcttatttttttcttcttcctcttcttcctcct 782
Query: 181 ccttttttgttctctaaagtatagattccctgaaaagttatacttctactgttgttgaga 240
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 781 ccttttttgttctctaaagtatagattccctgaaaagttagaattctactgttgttgaga 722
Query: 241 atgtgtggaaaatctgtggctcttacatgtctaacactctgtgacatagaagtgagcttt 300
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 721 atgtgtggaaaatctgtgtctcttacatgtctaacactctgtgacaaagaagtgagcttt 662
Query: 301 atgtgaccagtgcaaataagcagtgtgattcactctcagctcccaaagatgtgacagtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 661 atgtgaccagtgcaaataagcagtgtgattcactctcagctcccaaagatgcgacagtga 602
Query: 361 gccatgtcaaagcaacactgttcatttcagcaatgctaaggattctatttctgtcttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gccatgtcaaagcaacactgttcatttcagcaatgctaaggattctatttctgtcttctc 542
Query: 421 aaaacactggcttctgtca-ttttttttgttttatcaaaaccatgtgttgcttgaagctt 479
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 541 aaaacactggcttctgtcatttttttttgtcttatcaaaaccatgtgttgcttgaagctt 482
Query: 480 ttaatttctatttcattactcaagcaactagatagcattatgctgtggactatttcagta 539
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 481 ttaatttctatttcattactcaagc-actagataccattatgctgtggactatttcagta 423
Query: 540 aaatatatttataaagatgccatttgctaatgcc 573
||||||||||||||||||||||||||||||||||
Sbjct: 422 aaatatatttataaagatgccatttgctaatgcc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_b22.g1 MSMg01no436_b22.g1 CHROMAT_FILE:
MSMg01no436_b22.g1 PHD_FILE: MSMg01no436_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:07 2005
(521 letters)
>mm_chr16_28202558_28203484
Length = 927
Score = 853 bits (441), Expect = 0.0
Identities = 505/531 (95%), Gaps = 14/531 (2%)
Strand = Plus / Plus
Query: 1 tctaaaaattgtgtaattatttgaaattatttccccttcatcaaataatatgatatcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaaaattgtgtaattatttgaaattatttccccttcatcaaataatatgatatcttt 260
Query: 61 aaaggcttctgtgctttattgactgcataaagttgcattgaaagtgttgaaagtaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggcttctgtgctttattgactgcataaagttgcattgaaagtgttgaaagtaattaa 320
Query: 121 cttggtttttaatcaaagccaactctttttgtactgataggcaagcaagccaagcatatt 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 321 cttggtttttaatcaaagccaactctttttgtactgagaggcaagcaagccaagcatagt 380
Query: 181 ctaagcaggctctctatcacggagtc-gtagttcattctcatcattacctcttctgtctc 239
|||||||||||||||||||||||| | |||| |||||| ||||||||| ||||||| |||
Sbjct: 381 ctaagcaggctctctatcacggag-ctgtagctcattcccatcattac-tcttctgcctc 438
Query: 240 cacttgtttgcaccgcaacatgcatgcttttgagctcaggcaagaatcttggaggtgtgt 299
| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgcttgttttcacggcaacatgcatgcttttgagctcaggcaagaatcttggaggtgtgt 498
Query: 300 agcctctgtagttagcataggaagatggtgctataatgacatctttcctgcattctg--- 356
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcctcggtagttagcataggaagatggtgctataatgacatctttcctgcattctggtc 558
Query: 357 -----ttccctcctctctcagactggcatgatcatggagtga-ctgcgaagctgatgaac 410
|||||||||||||| |||||| |||||||||||| || ||||| |||||||||||
Sbjct: 559 ctgcattccctcctctctc-gactgggatgatcatggag-gaactgcggagctgatgaac 616
Query: 411 acacaaaccttgccttctggcctctggcttccttgcggttgttgaaacacacgcagctca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acacaaaccttgccttctggcctctggcttccttgcggttgttgaaacacacgcagctca 676
Query: 471 tctaattttccctcattcctgacaacatcttaacttcttacacatcgcagt 521
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctaatttcccctcattcctgacaacatcttaacttcttacacatcgcagt 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 927
Length adjustment: 10
Effective length of query: 511
Effective length of database: 917
Effective search space: 468587
Effective search space used: 468587
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
