BAC Information

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BAC

Clone NameMSMg01-436C01
Chromosome16 (Build37)
Map Location 56,078,841 - 56,079,327
singlet/doubletsinglet
Overlap geneSenp7
Upstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1
Downstream geneImpg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436C01.T7 (MSMg01no436_c01.b1)MSMg01-436C01.TJ (MSMg01no436_c01.g1)
ACCAG527269AG527270
length750787
length of high quality
(start - end)
489 (75 - 563)97 (160 - 256)
definitionCHROMAT_FILE: MSMg01no436_c01.b1 PHD_FILE: MSMg01no436_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:07 2005CHROMAT_FILE: MSMg01no436_c01.g1 PHD_FILE: MSMg01no436_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGTATTCTCCTCTCGTCAGGAAGCACCTTTACCCACTGAG
CCATCTACCAGTCCTCACAGCCAATTTCTTTCTTTTTTATGTTTTTAATT
GAAATAGAATTATATCCATTTCTCCCCTTCCTCTCCTCCCTTCAGCCCCT
CTCCGCTACCCTCGCTTGAAAGCCACTTTCTTCATGAGCCACAATGCACA
AGAGCACACAAAGAATTTAGAAACCCTGAAGGTAGTTTGGTTTTTGGTTT
TAAACCCAAACTAGTTATTTTTTATGTTATGTAACTCTCTTTTTCCACAA
AGTATGGAAAATTAACATAAAATGGCAGTAAAAGATATTAAAGATATAGA
TACTGTATTTAGGACCAGAATTTTAATCCTGGTCCTGTTTCTAACACTAG
CTCTTACTACAGATGCTTATGACTCTTAAATCCTAGTTTCATCCATAAAT
CAAAAATAATAGGTCACTTGAAAGGGTTTTTGAAAGAATGAAAGTTTGTC
AGGCCAAGAGTGCAGAAGGTGCAGTCCAGCAATGTCATCTTCATACACTT
GCAAACAAGATCTCAGACATAGCTGAGCTCGTGAGTACGTGAAGAGGAAG
ATAGTGTTGTACCACTGGCTTTGATGAGTATATGAATCTCATGTGATGAT
GAATAGATTTACTCTAATACAAAGTTCATATAACATCGGTGTTAGACATG

AGGCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTCGCAGAAATTCATTAAGNAGACCGGGCTTGAC
CTCAAACTCAAAGAGATCTGCCATCCCCTGCCTCCTGAGTGCCAGGATCA
AAAGTGGGTATCACTACCAACCAATCTCCCTGCACTCTTTCCTTAGGTAC
CCTGTATATACCACCTCACATTATCTTTTTATTAGGTACCCTGTATATGC
CATCTCACGTTGCCTTTTTAATTAAAGATGAGCCTGTACTTTTTACATAG
CTATTATATATGCTAACTTCTTTATCAACATACTCTTGATCATATCTACT
TAACTTTACTGACATTGATGTTTGTAACACTGCCACACTTCATCGCCTTT
GTATTCTCTCCCCACGCTCATCACGATAAACAGAACCATTTCATATTTTT
ATCTAATCCCTTTTCCTCCATTCTGCGACCTCCCGCTTTGCTATCGCACC
TATTTTTATTTTTTTCTTTTTCCATCCTTTTTTTATCTGCTTATTTCCCT
GTTAATTTGCTCTTCTCTCCTTTGCTTACTTCTATCCCTCCCTCTTTTTT
CTTCTCCTTTCACAAAAACTCTTGCTCATTATACAATCTTTTATTTCTCC
ATTTTTATATCTTCTCCTACCTCACATCTTTTCTTTCATAAATTATCCCT
CTCTGTTACCTCATCTCCTCACTCTACTTCTCTTCTTTCTTTTACCTATC
TCCTTCATATTTTATCCTTTACCCCATCTTGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_c01.b1 MSMg01no436_c01.b1 CHROMAT_FILE:
MSMg01no436_c01.b1 PHD_FILE: MSMg01no436_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:07 2005
         (489 letters)



>mm_chr16_56078641_56079527
          Length = 887

 Score =  870 bits (450), Expect = 0.0
 Identities = 480/490 (97%), Gaps = 4/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcaggaagcacctttaccca-ctgagccatctaccagtcctcacagccaatttctttct 59
           ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct: 687 gtcaggaagcacctttacccacct-a-ccatctaccagtcctcacagccaatttctttct 630

                                                                       
Query: 60  tttttatgtttttaattgaaatagaattatatccatttctccccttcctctcctcccttc 119
           ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 629 tttttatgtttttaatttaaatggaattatatccatttctccccttcctctcctcctttc 570

                                                                       
Query: 120 agcccctctccgctaccctcgcttgaaagccactttcttcatgagccacaatgcacaaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agcccctctccgctaccctcgcttgaaagccactttcttcatgagccacaatgcacaaga 510

                                                                       
Query: 180 gcacacaaagaatttagaaaccctgaaggtagtttggtttttggttttaaacccaaacta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gcacacaaagaatttagaaaccctgaaggtagtttggtttttggttttaaacccaaacta 450

                                                                       
Query: 240 gttattttttatgttatgtaactctctttttccacaaagtatggaaaattaacataaaat 299
           ||||||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 449 gttatttttta-gccatgtaactctttttttccacaaagtatggaaaattaacataaaat 391

                                                                       
Query: 300 ggcagtaaaagatattaaagatatagatactgtatttaggaccagaattttaatcctggt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggcagtaaaagatattaaagatatagatactgtatttaggaccagaattttaatcctggt 331

                                                                       
Query: 360 cctgtttctaacactagctcttactacagatgcttatgactcttaaatcctagtttcatc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctgtttctaacactagctcttactacagatgcttatgactcttaaatcctagtttcatc 271

                                                                       
Query: 420 cataaatcaaaaataataggtcacttgaaagggtttttgaaagaatgaaagtttgtcagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cataaatcaaaaataataggtcacttgaaagggtttttgaaagaatgaaagtttgtcagg 211

                     
Query: 480 ccaagagtgc 489
           ||||||||||
Sbjct: 210 ccaagagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space:   420083
Effective search space used:   420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)