BAC Information

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BAC

Clone NameMSMg01-436C18
Chromosome16 (Build37)
Map Location 84,684,792 - 84,710,955
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634
Downstream geneMrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436C18.T7 (MSMg01no436_c18.b1)MSMg01-436C18.TJ (MSMg01no436_c18.g1)
ACCAG527302AG527303
length756791
length of high quality
(start - end)		638 (45 - 682)406 (77 - 482)
definitionCHROMAT_FILE: MSMg01no436_c18.b1 PHD_FILE: MSMg01no436_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:10 2005CHROMAT_FILE: MSMg01no436_c18.g1 PHD_FILE: MSMg01no436_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,684,792 - 84,685,425)(84,710,552 - 84,710,955)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTTCTGACTCAATATCTCACTTGCTTTCCACTTTACAACACCTG
TTTAGAAGTAGATGGGAAGGCTAACTTAGTCCAGCAGACCAAAAGCCACC
TGGCCCAGCCTTAAATATATATGTATCCCAGCAATACAATACACTGCTCT
AATGCAACCAAACTTATTCAACTAGATTGTCACAACTCCATCAAAAATGC
AGGGACAATATGTTCCTTGTTCATTATTAACGCCACTGCATCTAGCAATG
TGTCTGACATAAAGTACATGCTCCAAGGAAACTTCTGTGACATGAAAACT
TGAAAGACCAACACAAACTCTTGACACATAAAGTAAACCACATGCATTTT
TATCTCTGTGTAACCAAAAGGAAGGAAGGCCTGAAGCTACTCCTTTGTAG
TCTCCTCAAAAGTTAAGACAATGCTACTAATGACAGTGTCTTCCTCCAGG
ATATTTAAGACAGTTTCTAACCTATATTTTCCTTATTTTTTTTTTTTGCA
GTACGAGAAACAGAACGCCAAACTTTGTGCAAGCAACCTACTACTGAGCA
GCATCTCTTGCTGTTTTCAGTATAAGTTACAATAAATGTAAAACAAATCA
CATTGTAGGTATATGTAAATATAAGCTAATCACTTGTTATAAGGGAGGAA
TAGGAAAAGAGATGGAGACAGATGGAGAGAGAAGCAGAGGTAACAGAAAT
TGGTTC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTGAATCCTATGTAGATTAC
AAAAATCAATTGCATATCATTGCATTTGCAAATCATCTGGATTTCCCACC
AGAATTTACCCTGAACCTGCATTTCTGAAGCTATGTTCTGGACTAGACCA
GGGAAGTAGGGAGCGAAGGTTAAGGCAGCTGAGTAAAACATGAAGACAGG
GGGAAGCTCTGCACGAGTCATAGTTAACAAGGCTTTGGTTGCCTTTTGAC
CTAAGATGAAAGTTGAAGATGACTGTGAACACCATGCCCTTTCTTACAGC
TCCTAAAGTTCTTCATCTGCTCTAGCCTGGCTTCTGTTCTCAGTCCGGAG
TCTCTGACCATCAGAACCAATTCCTCCAGGGTGAGACAGGCTTCAGGGAG
GAAGTTCCTACAGTGCAATGAGGAAGGAGGNNGTGGGGGTGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_c18.b1 MSMg01no436_c18.b1 CHROMAT_FILE:
MSMg01no436_c18.b1 PHD_FILE: MSMg01no436_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:10 2005
         (638 letters)



>mm_chr16_84684588_84685625
          Length = 1038

 Score = 1141 bits (590), Expect = 0.0
 Identities = 623/634 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttctgactcaatatctcacttgctttccactttacaacacctgtttagaag 64
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcagcttctgacttaatatctcacttgctttccactttacaacacctgtttagcag 264

                                                                       
Query: 65  tagatgggaaggctaacttagtccagcagaccaaaagccacctggcccagccttaaatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 tagatgggaaggctaacttagtccagcagaccaaaagccacctggcccagccttaaatac 324

                                                                       
Query: 125 atatgtatcccagcaatacaatacactgctctaatgcaaccaaacttattcaactagatt 184
           |||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatgtatctgatcaatgcaatacactgctctaatgcaaccaaacttattcaactagatt 384

                                                                       
Query: 185 gtcacaactccatcaaaaatgcagggacaatatgttccttgttcattattaacgccactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 gtcacaactccatcaaaaatgcagggacaatatgttccttgttcattattaacaccactg 444

                                                                       
Query: 245 catctagcaatgtgtctgacataaagtacatgctccaaggaaacttctgtgacatgaaaa 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catctagcaatgtgtctgatataaagtacatgctccaaggaaacttctgtgacatgaaaa 504

                                                                       
Query: 305 cttgaaagaccaacacaaactcttgacacataaagtaaaccacatgcatttttatctctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgaaagaccaacacaaactcttgacacataaagtaaaccacatgcatttttatctctg 564

                                                                       
Query: 365 tgtaaccaaaaggaaggaaggcctgaagctactcctttgtagtctcctcaaaagttaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtaaccaaaaggaaggaaggcctgaagctactcctttgtagtctcctcaaaagttaaga 624

                                                                       
Query: 425 caatgctactaatgacagtgtcttcctccaggatatttaagacagtttctaacctatatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caatgctactaatgacagtgtcttcctccaggatatttaagacagtttctaacctatatt 684

                                                                       
Query: 485 ttccttattttttttttttgcagtacgagaaacagaacgccaaactttgtgcaagcaacc 544
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttccttatttttttcttttgcagtacgagaaacagaacgccaaactttgtgcaagcaacc 744

                                                                       
Query: 545 tactactgagcagcatctcttgctgttttcagtataagttacaataaatgtaaaacaaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tactactgagcagcatctcttgctgttttcagtataagttacaataaatgtaaaacaaat 804

                                             
Query: 605 cacattgtaggtatatgtaaatataagctaatca 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 cacattgtaggtatatgtaaatataagctaatca 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_c18.g1 MSMg01no436_c18.g1 CHROMAT_FILE:
MSMg01no436_c18.g1 PHD_FILE: MSMg01no436_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:10 2005
         (406 letters)



>mm_chr16_84710352_84711157
          Length = 806

 Score =  704 bits (364), Expect = 0.0
 Identities = 394/404 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagttgaatcctatgtagattacaaaaatcaattgcatatcattgcatttgcaaatcat 60
           ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 604 atagttgaatcctatgtggattactaaaatcaattgcatatcattgcatttacaaatcat 545

                                                                       
Query: 61  ctggatttcccaccagaatttaccctgaacctgcatttctgaagctatgttctggactag 120
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 544 ctggatttcccaccagaatttaccctgaacctgcgtttctaaagctatgttctggactag 485

                                                                       
Query: 121 accagggaagtagggagcgaaggttaaggcagctgagtaaaacatgaagacagggggaag 180
           ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct: 484 accagggaagtagggagcgaaggttaaagcagccgagtaaaacatgaagacacggggaag 425

                                                                       
Query: 181 ctctgcacgagtcatagttaacaaggctttggttgccttttgacctaagatgaaagttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctctgcacgagtcatagttaacaaggctttggttgccttttgacctaagatgaaagttga 365

                                                                       
Query: 241 agatgactgtgaacaccatgccctttcttacagctcctaaagttcttcatctgctctagc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 agatgactgtgaacaccatgccctttcttatagctcctaaagttcttcatctgctctagc 305

                                                                       
Query: 301 ctggcttctgttctcagtccggagtctctgaccatcagaaccaattcctccagggtgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctggcttctgttctcagtccggagtctctgaccatcagaaccaattcctccagggtgaga 245

                                                       
Query: 361 caggcttcagggaggaagttcctacagtgcaatgaggaaggagg 404
           |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 244 caggcttcagggtggaagttcctacagtgcaatgaggaaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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