BAC Information

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BAC

Clone NameMSMg01-436I09
Chromosome16 (Build37)
Map Location 78,340,706 - 78,341,189
singlet/doubletsinglet
Overlap geneCxadr
Upstream gene2810055G20Rik, LOC435483, LOC100039561
Downstream geneBtg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I09.T7 (MSMg01no436_i09.b1)MSMg01-436I09.TJ (MSMg01no436_i09.g1)
ACCAG527569AG527570
length7421,071
length of high quality
(start - end)
486 (71 - 556)---
definitionCHROMAT_FILE: MSMg01no436_i09.b1 PHD_FILE: MSMg01no436_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:37 2005CHROMAT_FILE: MSMg01no436_i09.g1 PHD_FILE: MSMg01no436_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCATAAGCTTCCCATTGTACACTGGCGTTTGTATGGAGTGGCAAAC
AACATATGAATGTTTAACTAATATATGATTACTTTCTTTATTCTTCTTGT
TCAAGGGATGAGGTTGAAAGAGGTTTGGTACAGGAAAGCAGGAAGGAAAG
ACACACTGAAGCTTTGGTAGATGTCTGTCAAAGCAAAATAAAGCCACACC
GCTTGGCAGGGGACTGCTTTCTTCATTTTATTTCAAAAGTACACAAGGTC
ACAAAACTAAGAGCAAGTTTCTGTTTTTAGACAAAACTGTTCTTACAAAC
TTTGAAATCTGCATCATTGAATATGTAATCCAGATATTTGAAATACAAAA
TCTGAAACTGACACTATAACTTTGCAAATGTGGGTGTCAAATTAGTGTTC
TTAATACAACTGTGTTTATTGCCAAAATTCACGATTAGGGACAAGAATAA
GTCAGTTGGTGAACTGTGGTCCTTCTCAGCACCTGTGTCATTAAACAAAT
TAGCAGATATCCCAAAGCTCGTCTTTGGCAGACTTCTTAGTGTCTGAATC
AACAACAAGTCCAACTGATGGCCTCTATTCTCTAAATTACAAACTGGGAC
ATAGTTTGTAAGCTTGAACTTAAAATTTAAGGGCACATTCAATGAAGGTA
AACAAATGTTCTGTCTTCCTATTGGAAATATTCCTCAATTTT
TTCGATGATAGTGGGGTAGCCTGGGAGGAGGTCTGGTTTTCCCATATTTA
GNGTGACACTATAGGAAGGTATGCCCCGAGAATATCATGTGACTGTCACA
TAACCTTGTTTTCAGTTGAGGTAGACACGGCATCGAGAGTAGCTATATTG
TACCCTATATGATAGCACGTTACTACATTGTCTGTCATTCCATAATATTC
ATAATTCTTCACGCTCCGCCGCGCATGACTGATAGGTTGAGTTTTTCTCA
TAACTCCTGAGATTCTGTCTCCTTGCTCTCACGCCGGAACTCCCCGCATC
CCTATCGCAGAGTAGAGTAGGATGTTTCTGTTGTTTGGTTTGGCTCTACG
TCTTTCCTTGTTGCTGTTGTCTTGAGTATAGTCTTTTTTGTACTGTGTAA
TCATGTCGTATGTATTCGATCCTTGTCCTCATATAAATGTATATTCTATT
AATCGGAAGTATTACCTGTTATAACACTACATCGATCTTGTGCCGAAGGC
GTTACATCTATGATTATTACGTGGTTTCTGGTTTCTTCTCATTTGCACCG
AATATTTTGCTTCTCTACTTGTACACACTGCCACTCTAATCGCAATGTTC
CACGGCACCGTATACATCCCTGACCCGGTACTCTTCGCACCGTTCTGACC
GCTCCTCATTTCATTCCCTCTAGTCTCTCCATAGCCTCAAATTCACTGTT
TGATGTGTCTCGTGATCGCCTGAATTTGTTGTTGTTGATCGCTCTTCACC
CTACTTATCTCTTATTTCTTTTCCTCTTTCTTCTCAATTATTGTTTCTCT
CCTTAACGGTTTCCTCGATTCCATCCTTCTTCATCTTCTTGCTTCCTATC
ACCTATTTTTCCATGTGACTGGGATGTATCGTAGAGCGTACCGCTGCCGT
CTTCTCTCCCTCTTTCATTACATTTCCATGAACTTCCTCTCCATTCCTCT
CTTTTATGTCCAGTAGTCTCACGTATGGTCTTCTTTTCATTTGTTCATTG
TTAATTGTTGTTTGTATCGATTGTTGATTCGCGATAGAAGAATTGTGTTT
GTAATCTCGTACTACCTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i09.b1 MSMg01no436_i09.b1 CHROMAT_FILE:
MSMg01no436_i09.b1 PHD_FILE: MSMg01no436_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:37 2005
         (486 letters)



>mm_chr16_78340506_78341389
          Length = 884

 Score =  882 bits (456), Expect = 0.0
 Identities = 478/486 (98%), Gaps = 2/486 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtacactggcgtttgtatggagtggcaaacaacatatgaatgtttaactaatatatgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 684 gtacactggcgtttgtatggagtggcaaacaacatatgaatgtttaactaatatatgat- 626

                                                                       
Query: 61  actttctttattcttcttgttcaagggatgaggttgaaagaggtttggtacaggaaagca 120
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 -ctttctttattctccttgttcaagggatgaggttgaaagaggtttggtacaggaaagct 567

                                                                       
Query: 121 ggaaggaaagacacactgaagctttggtagatgtctgtcaaagcaaaataaagccacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaaggaaagacacactgaagctttggtagatgtctgtcaaagcaaaataaagccacacc 507

                                                                       
Query: 181 gcttggcaggggactgctttcttcattttatttcaaaagtacacaaggtcacaaaactaa 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcaaggcaggggactgctttcttcattttatttcaaaagtacacaaggtcacaaaactaa 447

                                                                       
Query: 241 gagcaagtttctgtttttagacaaaactgttcttacaaactttgaaatctgcatcattga 300
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagcaaggttctgtgtttagacaaaactgttcttacaaactttgaaatctgcatcattga 387

                                                                       
Query: 301 atatgtaatccagatatttgaaatacaaaatctgaaactgacactataactttgcaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atatgtaatccagatatttgaaatacaaaatctgaaactgacactataactttgcaaatg 327

                                                                       
Query: 361 tgggtgtcaaattagtgttcttaatacaactgtgtttattgccaaaattcacgattaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgggtgtcaaattagtgttcttaatacaactgtgtttattgccaaaattcacgattaggg 267

                                                                       
Query: 421 acaagaataagtcagttggtgaactgtggtccttctcagcacctgtgtcattaaacaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acaagaataagtcagttggtgaactgtggtccttctcagcacctgtgtcattaaacaaat 207

                 
Query: 481 tagcag 486
           ||||||
Sbjct: 206 tagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space:   416024
Effective search space used:   416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)