BAC Information

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BAC

Clone NameMSMg01-436J09
Chromosome16 (Build37)
Map Location 16,472,621 - 16,472,934
singlet/doubletsinglet
Overlap geneFgd4
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436J09.T7 (MSMg01no436_j09.b1)MSMg01-436J09.TJ (MSMg01no436_j09.g1)
ACCAG527617AG527618
length745739
length of high quality
(start - end)		606 (47 - 652)572 (73 - 644)
definitionCHROMAT_FILE: MSMg01no436_j09.b1 PHD_FILE: MSMg01no436_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:42 2005CHROMAT_FILE: MSMg01no436_j09.g1 PHD_FILE: MSMg01no436_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGTGGACTACTGAATAGCTGAGTCGCACCTGAAAAAATG
TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAAACCTTAGAT
TCTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGAAGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACTGTAGGATCCCGCAATACCTCTCCTGGGT
ATATATCCAGAAGATATTCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATATCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGCATACAGAAAATGTACATTTACACAATGGAC
TGCTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGCATCATCCTGGGTGAGGTAACCCAATCACAAAAGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
TAATACCCAAGATATAAGATACCATTTGCGAAACACATGAAACTCAAAGT
TAAACTTCTGATTGATGCTAAGAAGCAAACAGAATTCTTACAAAG

CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGTGTCCTTGGTTACTGTGTACC
TCCTTGGAAGCATGCAGGCTGTAGTGTTTGGGTGGGTATCCCTCTAATTT
TTAATAGTGAGTAAAAGCCTCGTGTTGTGTGCCATCTGTAGCAGTAAATA
TTTGAAGTCCACTCTATTCTCCCAGGAGGTGTGTTCACACCTCCCACCCC
TAATAGCCCTGGATTCAAGTATGAAAGACATGCACATATAACCTTTATAT
TTTAATATGCCTTAACCTTCTCAATAGCTGGGCCACTCCTGAACCTACAC
ATGGCTAACATACTCCCCTCCAATATTCTTATTACTTTCTAAAATCTATA
CTTTATCTCTGCTACCCCAGACCCAATCAGGGGAGCAGCCCTTGGGGCCG
CTTTTCCCTGATTCTTACATGGCTGATTCTCTGTCTTCCACAGCTCTCGT
GTTTGCATCATCTTCCTTCTGTCCTGGCGATTCTCCTTCTCACTCTTCTG
CATTTCCTCGATGGGAATCCTCAGTGTCCAGTCTCTGTCCCCTTGAGCAG
TCATTGGCTGTTAGCTCTTTATTGACCAGTCAAAAAAAACAAACAAACAA
ACTAGCAAAAAACAACTGCAGGCACCTGAATCGGACCTGTGAATTCCCAT
GTAAGCACAAATAAAAACTGCAACACACCCAGAAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_j09.g1 MSMg01no436_j09.g1 CHROMAT_FILE:
MSMg01no436_j09.g1 PHD_FILE: MSMg01no436_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:42 2005
         (572 letters)



>mm_chr16_16472621_16473592
          Length = 972

 Score =  576 bits (298), Expect = e-168
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgtgtccttggttactgtgtacctccttggaagcatgcaggctgtagtgtttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcacctgtgtccttggttactgtgtacctccttggaagcatgcaggctgtagtgtttggg 255

                                                                       
Query: 61  tgggtatccctctaatttttaatagtgagtaaaagcctcgtgttgtgtgccatctgtagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 tgggtatccctctaatttttaatagtgagtaaaagcctcgtgttgtgtgtcatctgtagc 195

                                                                       
Query: 121 agtaaatatttgaagtccactctattctcccaggaggtgtgttcacacctcccaccccta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 194 agtaaatatttgaagtccactctattctcccagcaggtgtgttcacacctcccaccccta 135

                                                                       
Query: 181 atagccctggattcaagtatgaaagacatgcacatataacctttatattttaatatgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atagccctggattcaagtatgaaagacatgcacatataacctttatattttaatatgcct 75

                                                                       
Query: 241 taaccttctcaatagctgggccactcctgaacctacacatggctaacatactcccctcca 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  taaccagctcaatagctgggccactcctgaacctacacatggctaacatactcccctcca 15

                         
Query: 301 atattcttattact 314
           ||||||||||||||
Sbjct: 14  atattcttattact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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