BAC Information

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BAC

Clone NameMSMg01-436M20
Chromosome16 (Build37)
Map Location 97,118,795 - 97,119,131
singlet/doubletsinglet
Overlap geneDscam
Upstream geneLOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436M20.T7 (MSMg01no436_m20.b1)MSMg01-436M20.TJ (MSMg01no436_m20.g1)
ACCAG527783AG527784
length792773
length of high quality
(start - end)
42 (121 - 162)337 (142 - 478)
definitionCHROMAT_FILE: MSMg01no436_m20.b1 PHD_FILE: MSMg01no436_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:58 2005CHROMAT_FILE: MSMg01no436_m20.g1 PHD_FILE: MSMg01no436_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCG
GAATTCTAATACCATTTCCGTACCGGATTACTCAGTCCACCTCTGTGTGG
GCCTGGCCAGGGCCTAAGAAAGCTCTAGAAGCAAAGCGGTAGGAAGTTGT
TAGCTTTCTCAGAGGACAAGGGAAACCCCAGGACACCTGCCACGCCTCCC
GACCCCGGTGGAGCTGCCCAGGCTAGCCTCTCTAACCTGCCCGCTCTCCT
CACTGCCCTGAGCGTCCGCCCAGTCCTGCGCCATTCGAAAGCCCGCCCGA
CCCCTCAGTCGCCGAGTCTACTGTTTTGCCCGACCCCCTCCGCCGCGGCG
CCGCTCGGCCAGTCCTCCAAGGCTCGTACCGGGTCTGAGAGCCCCGCACA
CGCTTCCCGTCTCACCTCGAGCCTCCCGGGTAACACTGGCGGCTCCCTCA
CCTTCTCCCAGCCGCACACCCGGTCCCGTGCTGCAGTGTAGACTGCGGTA
GAGGTGGACCGACCGTCCCGTGCCTCATAACTAACAGGTCCCGTTTTAGT
CCGTCGCGCGAGCGTGTCTCTCGCTACGATTCCTTACCTTGTCGCTCGGC
TCTTGTTCCTGAATTGGTTTTAACGAATGCCCCAATCCCCGCCCCTTTTT
CCCATAATTTTATTATTTTATTTGTTATAATTTTTCTTTTCGTTTTTTAC
ACCCTTTTTTCTTCCCCCCCCCTAATGTTTATCTTTTCTCTGTATATTTG
CGTTGCTTCCCTCCTATTATCTTCACCTTACTTATTTTTTTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGGACAGATAAGGTGGTAGACAGGTG
TGCAATGATGGATGCATGCAAAATGACTTGATGGAAATATCATGATAATT
CTAGCCTTTCTCTTTATTCAGCTCCTCAACAGGCCACTGCTTGTTAAAAA
CTAATTTTACACTACTGCAAAGTTAACAAACCGCTCTTCCAAACACATAA
GACCATCAGATTTCATTTCCAGTATGTACAAGAGTATTGACTCTTTGCTT
CATCCCCCTACATTAATCATTATCTCTTTAAAAACTCATTTCCAATTTGA
TAAGAAAATTAATTCCATGCTTTCATTCGGGCTTCCAAGTGCCCACTCTC
GGCAAAGCACATAATTCTGAGAATAAAGCACCTGCTCTTTCACGTCGTTG
TTTGATGGCCTACGTACAAAGAAGCAGCCAGGAGTGAGTAGTAAAGGTTT
CAATCCGAGCATGAATGAAGATAATTAAACTGCAGCCGTTACTTCAGGGA
ATAAGTGCTTCCGCATGTGAATGCGCTGGACATTGTAAAGAAGCTTTGCA
TTGGACAAAGAGAGAGACCAATCCACATGTTTTTAAAAAAACTATTGTGC
CCTAAGTTTGTCACACTCTCACAATCTAAATGAAGTTTGCTAAACTCCTC
ATGTGCCCTTTCCTGCCTGCCCCATAATCATATTAACCCCCTTACTTAAT
AAGTATACATTCCTCTCCTGCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_m20.g1 MSMg01no436_m20.g1 CHROMAT_FILE:
MSMg01no436_m20.g1 PHD_FILE: MSMg01no436_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:58 2005
         (337 letters)



>mm_chr16_97118595_97119331
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgataattctagcctttctctttattcagctcctcaacaggccactgcttgttaaaaac 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgataagtctagcctttctctttattcagctcctcaacaggccactgcttgttaaaaac 478

                                                                       
Query: 61  taattttacactactgcaaagttaacaaaccgctcttccaaacacataagaccatcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 taattttacactactgcaaagttaacaaaccgctcttccaaacacataagaccatcagat 418

                                                                       
Query: 121 ttcatttccagtatgtacaagagtattgactctttgcttcatccccctacattaatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcatttccagtatgtacaagagtattgactctttgcttcatccccctacattaatcatt 358

                                                                       
Query: 181 atctctttaaaaactcatttccaatttgataagaaaattaattccatgctttcattcggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atctctttaaaaactcatttccaatttgataagaaaattaattccatgctttcattcggg 298

                                                                       
Query: 241 cttccaagtgcccactctcggcaaagcacataattctgagaataaagcacctgctctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttccaagtgcccactctcggcaaagcacataattctgagaataaagcacctgctctttc 238

                                                
Query: 301 acgtcgttgtttgatggcctacgtacaaagaagcagc 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 acgtcgttgtttgatggcctacgtacaaagaagcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)