BAC Information

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BAC

Clone NameMSMg01-436N19
Chromosome16 (Build37)
Map Location 67,190,004 - 67,364,054
singlet/doubletdoublet
Overlap geneCadm2
Upstream genenone
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436N19.T7 (MSMg01no436_n19.b1)MSMg01-436N19.TJ (MSMg01no436_n19.g1)
ACCAG527829AG527830
length754761
length of high quality
(start - end)
144 (71 - 214)513 (75 - 587)
definitionCHROMAT_FILE: MSMg01no436_n19.b1 PHD_FILE: MSMg01no436_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:03 2005CHROMAT_FILE: MSMg01no436_n19.g1 PHD_FILE: MSMg01no436_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,363,937 - 67,364,054)(67,190,004 - 67,190,516)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGCCATCTGACAAGCAGTCAGTGCTCTAAAGTGCGGGGTCATC
TAACAAGCCCACCTGCTAAAGATATATTAAAGATTTAACTTTAAAGAGCT
AATATCAATGAATATGTTGTGTGGAATATATATATATATTTGTGTGTGTG
TGTGTGTGTGTGTCCATATATATATGCGTGAGTTATCTATCTTTACTTAC
AACTTTTTCTTGCTTGCAATATTGGATATTTGATTTGAACGCACCAATTC
TTATTTATAATCAACTACCATTTTTTTCTTTAAGCTATATCCAGATATAA
TACCCCTTGTATATTTCCTTTGCTTCACATTGAGTTTTGCTCATGATCTC
TCCTATATACCCCACCCTACCATTCAGATGCCATTTCCGGATAATTCACT
GTCCTCTTTAATTACCCACTATACTTTCTCTAACACTAAACTGATAGGCA
AGTCTAATATCCATCGCATACTTAATTTATCAATTCTCTCTGCGCCTATA
CCTATTATCTATTCTATTCCTTCATAGCCCCTCACTATTCTCCTCCTATT
ACTTATCGTTTATTTTTGACTTTCTCTCCACCCCGATCATTACATTGTCC
CTTGCATTCTTTCTTATTTCCCCTCCCCCTTTTATTTTATTCTTTCCATA
TAATTCCCCCCCAATCCTTTCCAGTACTATCACATTATACTACCTCCACC
CCCT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCTGACCAGAACTACACAGCAAA
CCCTACTTTAGATAAACAAACAAAAAATGCGCAGATAACAAACAAACAAA
AATAACACTAAGGAAAAAACTGTAAAATATATCTTGCCTAGGGAAAGGCA
AGAGGAGGAAAAATTAAGATTGATATTTTCTCTATATTCTGGAAAAGAAT
AGCAAAATTCAGGTCAATATGACCTTTTCTAAGTCTCGGCTTTCTAGCCC
AGACAGTATGCAGAGAACCACAGTAGACCAATCCATATCTGTGGGATACT
AGAACAAACTTTTAGAGCTCTGTGCTATAGATCAAGTTACCCTTACTGTT
TGTTTTGCACAACTGTTTTCTTTCATGCAAAGCTCTCTACCCACGGGCAG
AGGAGTGATGTGCTGTAGAGTAATAAAAATATGTGCTTACTGATTCTCTA
TGCTGCAGGAGACATGGAGGCAGTCCTTTGCGGAGAAAAATGAGTACATT
AGAGCTGGTCTCTGGCGTGGATGAGAATTGTTCAGTGGGTGAGACAGGGT
AGTAAAATGAATGGCCACACGAAAGCAGAAAATTGATGCCCAAATAGAGA
TAATAGAAAAACACCTGTGAAGCTCANACACACACAAAAAAAAACCCTGT
GTCTCGATATGTAAGAAGAATCCNAATATGACCACAGGGGTTTTCATATG
CATGGGAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_n19.b1 MSMg01no436_n19.b1 CHROMAT_FILE:
MSMg01no436_n19.b1 PHD_FILE: MSMg01no436_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:03 2005
         (144 letters)



>mm_chr16_67363736_67364279
          Length = 544

 Score =  228 bits (118), Expect = 9e-65
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagtcagtgctctaaagtgcggggtcatctaacaagcccacctgctaaagatatattaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagtcagtgctctaaagtgcggggtcatctaacaagcccacctgctaaagatatattaaa 260

                                                                     
Query: 62  gatttaactttaaagagctaatatcaatgaatatgttgtgtggaatatatatatatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gatttaactttaaagagctaatatcaatgaatatgttgtgtggaatatatatatatat 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no436_n19.g1 MSMg01no436_n19.g1 CHROMAT_FILE:
MSMg01no436_n19.g1 PHD_FILE: MSMg01no436_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:03 2005
         (513 letters)



>mm_chr16_67189804_67190716
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagctgaccagaactacacagcaaaccctactttagataaacaaacaaaaaatgcgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagctgaccagaactacacagcaaaccctactttagataaacaaacaaaaaatgcgcag 260

                                                                       
Query: 61  ataacaaacaaacaaaaataacactaaggaaaaaactgtaaaatatatcttgcctaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacaaacaaacaaaaataacactaaggaaaaaactgtaaaatatatcttgcctaggga 320

                                                                       
Query: 121 aaggcaagaggaggaaaaattaagattgatattttctctatattctggaaaagaatagca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aaggcaagaggaggaaaaattaagattgatattttctctatattctggaaaataatagca 380

                                                                       
Query: 181 aaattcaggtcaatatgaccttttctaagtctcggctttctagcccagacagtatgcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattcaggtcaatatgaccttttctaagtctcggctttctagcccagacagtatgcaga 440

                                                                       
Query: 241 gaaccacagtagaccaatccatatctgtgggatactagaacaaacttttagagctctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaccacagtagaccaatccatatctgtgggatactagaacaaacttttagagctctgtg 500

                                                                       
Query: 301 ctatagatcaagttacccttactgtttgttttgcacaactgttttctttcatgcaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatagatcaagttacccttactgtttgttttgcacaactgttttctttcatgcaaagct 560

                                                                       
Query: 361 ctctacccacgggcagaggagtgatgtgctgtagagtaataaaaatatgtgcttactgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctacccacgggcagaggagtgatgtgctgtagagtaataaaaatatgtgcttactgat 620

                                                                       
Query: 421 tctctatgctgcaggagacatggaggcagtcctttgcggagaaaaatgagtacattagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctatgctgcaggagacatggaggcagtcctttgcggagaaaaatgagtacattagag 680

                                            
Query: 481 ctggtctctggcgtggatgagaattgttcagtg 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtctctggcgtggatgagaattgttcagtg 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)