BAC Information

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BAC

Clone NameMSMg01-437D13
Chromosome16 (Build37)
Map Location 62,161,074 - 62,300,753
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437D13.T7 (MSMg01no437_d13.b1)MSMg01-437D13.TJ (MSMg01no437_d13.g1)
ACCAG528105AG528106
length753801
length of high quality
(start - end)		663 (44 - 706)331 (72 - 402)
definitionCHROMAT_FILE: MSMg01no437_d13.b1 PHD_FILE: MSMg01no437_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:31 2005CHROMAT_FILE: MSMg01no437_d13.g1 PHD_FILE: MSMg01no437_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,300,213 - 62,300,753)(62,161,074 - 62,161,396)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTAAGTATCTGTTCTTTGATTTTTCTTGGGTAAAATTTAGCAAG
GGCTGACTAGATAATGTAATATATTTCTTAACAAAACTTTTTAATTCATT
CTACATATAGTATATAAAAGATACCATTATTCCATTTTTTTCTAATATTC
ACTAACCTAAGACTTTAAACTTTATTCATTTAACAAGCAATTAGCAATGA
TATAAATGTTCATTCCTGATAATTAAGGACATTTGCCTTGTCACATATGC
TATTTCACGGTTACACAAGAATTTGTGAAGTGCCATTTCAAGCCTTTATT
TAAATGTTTGTTTTCTTTTCTAATTTTTAATTGTTATATGTATGTTTGTG
CACCGTATATGTGTAACATACTTGGAGTCCTGCAGAAGGTATTGTATTTC
CTGGAAAGAGAGTTACAGAGATTGTGTGTTACCACCTTGTCACTGTTGGG
AATTGAATCTAGGTCCTGAAACATCTCTCCAGGCCATCTTCTCACTATGT
TGGCCGATTTTTATTATTGACTTTTCAATGTTTTTTTTTAATATTTGAGA
TACATATTACTTATCATTTGTATAAATTTCAAATCTTTACTTTCAGTCTG
ATGGGATGTCATGACCCTACTCAACGTAAGCACTTGTCAAAAGATCAGAT
ATATTTAAATTTAAGGAANGTCAATTTATCAATCTGATTCATGATGAATC
ATG

ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATCCGAGAACACTATCTTGTAAAATAT
AGCAGGGCACATCGTGTTTGGTTTGTTTTAAATTTTAATCACCTTGATAT
ATCCAATGTTTATGAAAGAATCCAGCTACCTGTTAAAATAAATATTTTAA
GTGCACCCCTATATGTATTCATTCTGCATTAAATACATAAAACATTTATT
GAACTTTTACTCAATGGTAAGCACTGTTTACAAGATCATGGTCTTAAAAC
ACTGTCCATAAAGATTACCTTTAGAAAGAGGGGTTTCATTTTTTAATACT
TATTTACTATTTGTGTAAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TNGTCNNNNNTNNCCTTTNTTCTTTTTTTCTCTTCCTTCTCTCTTTTCTT
TCTTCCCCTTCTTCTTCCCTTCCTTCCTTTTCCCCTCTTTTTCTTCCCCT
TTTCCCCTTTTTCCTTTTTTTCCCCTCCTCTTCCTCCCCTTCCCCTCCTC
TTCTCCTCCTCCTTTCTTCTCCTCTTTCTCTTTTCTCTCTTCTCCTTTCC
CTCCCCTCTTTCTCCTTTCTTCCCCCTTTTTTTTTTTCCTCCCTTTTTCT
TTCCCCTCTTTTTCTCCTCTTTTTCCCCCTTCTTCCTCTTTTCTTTTTCC
TTCTTCCTCCTTTCTTTCTCCCTTTTTTTCTCTCCCCCTTTCTCTTCCTT
TTCCGCCTTTTCTCTTTCCTTTTTTCTCTCTTCCCTCTTTCTTCTTTTCT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_d13.b1 MSMg01no437_d13.b1 CHROMAT_FILE:
MSMg01no437_d13.b1 PHD_FILE: MSMg01no437_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:31 2005
         (663 letters)



>mm_chr16_62300213_62301275
          Length = 1063

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctaagtatctgttctttgatttttcttgggtaaaatttagcaagggctgac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattctttctaagcatctgttctttgatttttcttgggtaaaatttagcaagggctgac 482

                                                                       
Query: 65  tagataatgtaatatatttcttaacaaaactttttaattcattctacatatagtatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tagataatgtaatatatttcttaacaaaactttttaattcattctacatatagtatataa 422

                                                                       
Query: 125 aagataccattattccatttttttctaatattcactaacctaagactttaaactttattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagataccattattccatttttttctaatattcactaacctaagactttaaactttattc 362

                                                                       
Query: 185 atttaacaagcaattagcaatgatataaatgttcattcctgataattaaggacatttgcc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 atttaacaagcaattagcaatgatataaatgttcattcctgataattaaggacattagcc 302

                                                                       
Query: 245 ttgtcacatatgctatttcacggttacacaagaatttgtgaagtgccatttcaagccttt 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 301 ttgtctcatatgctatttcacggttacacaagaatttgtgaagtgccatttcaagtcttt 242

                                                                       
Query: 305 atttaaatgtttgttttcttttctaatttttaattgttatatgtatgtttgtgcaccgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttaaatgtttgttttcttttctaatttttaattgttatatgtatgtttgtgcaccgta 182

                                                                       
Query: 365 tatgtgtaacatacttggagtcctgcagaaggtattgtatttcctggaaagagagttaca 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 tatgtgtaacatacttggagtcctgcagaaggcattgtatttcctggaaagagagttaca 122

                                                                       
Query: 425 gagattgtgtgttaccaccttgtcactgttgggaattgaatctaggtcctgaaacatctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagattgtgtgttaccaccttgtcactgttgggaattgaatctaggtcctgaaacatctc 62

                                                                       
Query: 485 tccaggccatcttctcactatgttggccgatttttattattgacttttcaatgttttttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccaggccatcttctcactatgttggccgatttttattattgacttttcaatgttttttt 2

            
Query: 545 t 545
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_d13.g1 MSMg01no437_d13.g1 CHROMAT_FILE:
MSMg01no437_d13.g1 PHD_FILE: MSMg01no437_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:31 2005
         (331 letters)



>mm_chr16_62160874_62161604
          Length = 731

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatccgagaacactatcttgtaaaatatagcagggcacatcgtgtttggtttgttttaa 60
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatctgagaatactatcttgtaaaatatagcagggcacatcgtgtttggtttgttttaa 260

                                                                       
Query: 61  attttaatcaccttgatatatccaatgtttatgaaagaatccagctacctgttaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaatcaccttgatatatccaatgtttatgaaagaatccagctacctgttaaaataa 320

                                                                       
Query: 121 atattttaagtgcacccctatatgtattcattctgcattaaatacataaaacatttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattttaagtgcacccctatatgtattcattctgcattaaatacataaaacatttattg 380

                                                                       
Query: 181 aacttttactcaatggtaagcactgtttacaagatcatggtcttaaaacactgtccataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttttactcaatggtaagcactgtttacaagatcatggtcttaaaacactgtccataa 440

                                                                       
Query: 241 agattacctttagaaagaggggtttcattttttaatacttatttactatttgtgtaagag 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 agattacctttagaaagaggggtttcattttttaatatttatttactatttgtgtaagag 500

                                  
Query: 301 gtgtgtgtgtgtgtgtgtgtgtg 323
           |||||||||||||||||||||||
Sbjct: 501 gtgtgtgtgtgtgtgtgtgtgtg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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