BAC Information

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BAC

Clone NameMSMg01-437J05
Chromosome16 (Build37)
Map Location 82,321,861 - 82,322,386
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437J05.T7 (MSMg01no437_j05.b1)MSMg01-437J05.TJ (MSMg01no437_j05.g1)
ACCAG528375AG528376
length760751
length of high quality
(start - end)
249 (79 - 327)529 (80 - 608)
definitionCHROMAT_FILE: MSMg01no437_j05.b1 PHD_FILE: MSMg01no437_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:01 2005CHROMAT_FILE: MSMg01no437_j05.g1 PHD_FILE: MSMg01no437_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCAACCTCTCTAATGCAGAAGAAAATTAAGAGGAAATCA
GTAATTTGATTTTTCATTTTTTTCTTTTTAAAATGTATTAATTTATTTTT
AACACTCTATATTTTATCCCCACCTCCTACCCTGTCTACCATCTGACTGT
TCCACATCCCATAACTCCTCCCCACACCCCTGGTCCAAGAGGATGTCCCA
ACCTTCCTCCCCACCTTTCCTCTAATCTTCCTGGGGCCTCCAGTCTCTTG
AGGGTTAGGTGCATCATTTCTGAATGATCTTTCTATAAAGTCTTCTACTG
TATGTGTTTTGGGAGCCTCATATCAGCTGGTATATGTTGCTTGTTTGGTG
GTCCAGTGTTTGAGAGATCTCACCCCCCCAGTTTAATTGAAACTGCTGGT
CCTCCTACATGGTCGCCCTCCTTCTCAGCTTCTGTCAACCTTTCCTTAAT
TAAACGACAGGTGCCAGCAGCTTCTGTCCATTTGGTTGGTCGTAAATATT
TATATCTGACTCTTTCAGCTGCTTGTTGTTTCTTTCACACGCCGTTCATG
CTATGTCCCTTTTTGTTAGCATTCCACTTTCTTATCAATAGTGTCCGGCC
CTTGCTTTCTTTCTCTTGACCTGTATCCCCCTTATTGGCCCTAATTGTTT
TCTCACTTTCTTTTTCTTCAGCGTTTTCTTCCTTCATCTTTCTCCTGTCA
ATTTGTTTTA
NCCACGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTTTAACCTCTATTAA
AATCTATTTAACACATGTTCTGTCTTAACATGAAGGCATAAATGACATGA
ATTTACTTTTACCGTGTGACCATATCCTTTATTAATGTCGTCATCATCAT
ATTTCAAGTAATTAAATGTTATTATAAAGATGTAATCTGTTACACAGCAG
TGGCAAACAGATTATTTTCTTTCTATTACTTATTAGGAAACTTCCTTTAA
ACAAAATAACATGGGCATTAAGCCAGATGTTATGGTGTATAATTGCAATA
TCAGCACTTAGCAGGGAGGAAGACTGGAAGCTCCAGGCCAGTCTGGGTTA
CAGAAGTAGACTATTTCAGAGACAGAAGTCATGGTGCTCACAGACCAAGC
ACTTCTCTATAATACATAAAGCCCCACTTCATTTTCTTATTGAAATTATG
GATAAATATGAGCATGCCTAACTTTAAGAAAATAAACACTAATCATTCTA
TATTTTAATTTGTCTAATCTTACTGGAATATTTAATATAGGGTGGATAGA
GAAAAAGGACAGGCTTCAAGCTGACTTCATTATGAAAAATGCCTTAATTA
TAAAACTGATGCCAATCCACCCTCATTTGAATAAAATTAAGTTAACCCCC
CAGCGAAGTGTTAATTAACCCCCTTGCTTATACCTATTAAAAAACCTTAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_j05.g1 MSMg01no437_j05.g1 CHROMAT_FILE:
MSMg01no437_j05.g1 PHD_FILE: MSMg01no437_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:01 2005
         (529 letters)



>mm_chr16_82321663_82322589
          Length = 927

 Score =  826 bits (427), Expect = 0.0
 Identities = 503/529 (95%), Gaps = 3/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatttttaacctctattaaaatctatttaacacatgttctgtcttaacatgaaggcat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 724 tttatttttaacctctattaaaatctatttaacacatgtcctgtcttaacatgaaggcat 665

                                                                       
Query: 61  aaatgacatgaatttacttttaccgtgtgaccatatcctttattaatgtcgtcatcatca 120
           |||||||||||||||||||||||| |||||||||| ||||| |||||||| || ||||||
Sbjct: 664 aaatgacatgaatttacttttaccctgtgaccataccctttgttaatgtcatcctcatca 605

                                                                       
Query: 121 tatttcaagtaattaaatgttattataaagatgtaatctgttacacagcagtggcaaaca 180
           |||| ||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||
Sbjct: 604 tattccaagtaatttaatgttattataaagacataatctgttactcagcagtggcaaaca 545

                                                                       
Query: 181 gattattttctttctattacttattaggaaacttcctttaaacaaaataacatgggcatt 240
            ||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 544 aattattttctttctatcgcttattaggaaacatcctttaaa-aaaataacatgggcatt 486

                                                                       
Query: 241 aagccagatgttatggtgtataattgcaatatcagcacttagcagggaggaagactggaa 300
           |||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 485 aagccagacgtgatggtgtataattgcaataccagtacttagcagggaggaagactggaa 426

                                                                       
Query: 301 gctccaggccagtctgggttacagaagtagactatttcagagacagaagtcatggtgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 425 gctccaggccagtctgggttacagaagtagactatttcagagacacaagtcatggtgttc 366

                                                                       
Query: 361 acagaccaagcacttctctataatacataaagccccacttcattttcttattgaaattat 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 365 acagaccaagcacttctctataatacataaagccccactttattttcttattgaaattat 306

                                                                       
Query: 421 ggataaatatgagcatgcctaactttaagaaaataaacactaatcattctatattttaat 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agataaatatgagcatgcctaactttaagaaaataaacactaatcattctatattttaat 246

                                                            
Query: 481 ttgtctaatcttactggaatatttaatatagggtggatagagaaaaagg 529
           |||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 245 ttgtctaatcttactggaatatttaatatagggtggataga--aaaagg 199


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 927
Length adjustment: 10
Effective length of query: 519
Effective length of database: 917
Effective search space:   475923
Effective search space used:   475923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)