CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGTGTATACCAGATGGGCTTGAACCACAGAAATCTACCTCCC
TCTGTTTTCTTGGTACTAAGAAAAAAGGGATAAACCATCACATCAGGACA
ATTTTAACTTTTTTATCTTTATATAAAATATTTTCTTTTCAGTTTTTTAT
AAGTAAACATAAGAAAATATTATTTTTCTCTTAAATCCAAATAAGTTTTT
TATAAATTGTTATTATAGTAGCTTTTAATGAGGGCCAGAACATGTCTTCT
AAGTTCTATTTTTAAAAGATATTTTTGATATTTAAATGATTATTACTCAT
GTTAATCTAACTTGCAATAGATAAGTGGGTGACAGTCGATATACTCCATG
TCTTTGTTTTCTTGTCATTCTCTGGCATGTGACATGTTCTTGATTATAAC
TTAGAGGTAAGTTTCCTGCAGTCACATCGGCTGAACTAGATTGACATGTT
ATTTTCTTAAGCTATGCATACCCTGGAGGTGGCTGGTTAATTGTTATGTG
AATCATCTGACACATGAAAATCAAACACCATTATGTGACCATAATTTCAA
AAGATTCATTTGAAAACCATGGGGAACTCTGGCAGGAATAGAAATGGCTT
ATATAGAGACATTATCACCTGGAGCAGGTAGACTCAAAAAGTGTGAATGC
TTCAGTGCTTCTTAGAAGGGGGAACAAAATATTCACAGGAGGAAGTATGG
G

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGATCTGTGCCCCATTTT
TAATAGGGTTATTTAGTTCTTTGGAGTCTAACTTCTTGAGTTCTTTGTAT
ATATTGGGCATCAGCCTTCTATCAGATGTAGTTTGTAAAGATCTTTTTCC
AATCTGTTGGTTGCCATTTTGTCCTATTGACAGTGTCTTTTGCCTTACAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTATTGATCTTAGAGC
ATAAGCTATTGGTATTGTGTTCAGGAAACTTGTGCCTGTGCCCATGTGCT
CCAAGCTCTTCCCCACTTTCTCTTCTGTTAGTTTCAGTGTATCTGGTTTT
ATGTGGAGGTGCTTGATCCACTTGGACTTGAACTTTGTACAAGGAATTAA
AAGTGGATCGAGTTGGCCGGGCAGTGGTAGCACACACCTTTAATCCCAGC
ACTGGGAGGCAGAGGCAGGAGTTCGAGGCCATCCTGGTTTACAAAGTGAG
TTCCAGAACAGCCAGGGCTACACAGAGGAAACTCTGTCTCAAAAATAAAT
AAATAAATAAATAAATATATAAATAAATAAATAAATAAATAAAAATACAT
AAATAAATAAATAAATAAGTGGATCAAGTTGCATTCTTCTGCATGCTACT
CACCAGCTGAACCAGCACCATTTGGTGAAATTCTGCCTTTTTTTTACTGG
ATGGGT

Query= MSMg01no437_l13.b1 MSMg01no437_l13.b1 CHROMAT_FILE:
MSMg01no437_l13.b1 PHD_FILE: MSMg01no437_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:12 2005
         (647 letters)



>mm_chr16_52969001_52970047
          Length = 1047

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgtgtataccagatgggcttgaaccacagaaatctacctccctctgttttc 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgtgtagacaagatgggcttgaaccacagaaatctacctccctctgttttc 263

                                                                       
Query: 64  ttggtactaagaaaaaagggataaaccatcacatcaggacaattttaacttttttatctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggtactaagaaaaaagggataaaccatcacatcaggacaattttaacttttttatctt 323

                                                                       
Query: 124 tatataaaatattttcttttcagttttttataagtaaacataagaaaatattatttttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 tatataaaatattttcttttcagttttttataagtaaacataagaaaatatcatttttct 383

                                                                       
Query: 184 cttaaatccaaataagttttttataaattgttattatagtagcttttaatgagggccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttaaatccaaataagttttttataaattgttattatagtagcttttaatgagggccaga 443

                                                                       
Query: 244 acatgtcttctaagttctatttttaaaagatatttttgatatttaaatgattattactca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatgtcttctaagttctatttttaaaagatatttttgatatttaaatgattattactca 503

                                                                       
Query: 304 tgttaatctaacttgcaatagataagtgggtgacagtcgatatactccatgtctttgttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttaatctaacttgcaatagataagtgggtgacagtcgatatactccatgtctttgttt 563

                                                                       
Query: 364 tcttgtcattctctggcatgtgacatgttcttgattataacttagaggtaagtttcctgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttgtcattctctggcatgtgacatgttcttgattataacttagaggtaagtttcctgc 623

                                                                       
Query: 424 agtcacatcggctgaactagattgacatgttattttcttaagctatgcataccctggagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtcacatcggctgaactagattgacatgttattttcttaagctatgcataccctggagg 683

                                                                       
Query: 484 tggctggttaattgttatgtgaatcatctgacacatgaaaatcaaacaccattatgtgac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggctggttaattgttatgtgaatcatctgacacatgaaaatcaaacaccattatgtgac 743

                                                                       
Query: 544 cataatttcaaaagattcatttgaaaaccatggggaactctggcaggaatagaaatggct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cataatttcaaaagattcatttgaaaaccatggggaactctggcaggaatagaaatggct 803

                                                       
Query: 604 tatatagagacattatcacctggagcaggtagactcaaaaagtg 647
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatatagagacattatcacctggagcaggtagactcaaaaagtg 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)