Query= MSMg01no439_b09.b1 MSMg01no439_b09.b1 CHROMAT_FILE:
MSMg01no439_b09.b1 PHD_FILE: MSMg01no439_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:06 2005
(524 letters)
>mm_chr16_29030304_29031227
Length = 924
Score = 920 bits (476), Expect = 0.0
Identities = 516/546 (94%), Gaps = 26/546 (4%)
Strand = Plus / Minus
Query: 5 gaattcacctaaatttccacctttcatatcatgctgagtgtgataaaattggagaatatt 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattcacctaaaaatcaacctttcatatcatgctgagtgtgataaaattggagaatatt 771
Query: 65 gtgtgaatgagatattttgacaacatagaccaagaatcaccatgccctacctctcacctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gtgtgaatgagatattttgacaacatagaccaagaatcaccatgccctacctctcacctc 711
Query: 125 catcccacccatacatggcagacagacca--------------------------acaca 158
||||||||||||||||||||||||||||| |||||
Sbjct: 710 catcccacccatacatggcagacagaccaacacacacacacacacacacacacacacaca 651
Query: 159 cacacacaccatgcacacacactagtatggccataatttttgcatcattgaactacaaaa 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cacacacaccatgcacacacactagtatggccataatttttgcatcattgaactacaaaa 591
Query: 219 tatttttacacttgcatatgttctctcgaactcttactataattccagctctccccagtt 278
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 590 tatttttacacttgcatatgttctctcaaactcttactataattccagctctccccagtt 531
Query: 279 ctccctatactcctgaacataaggaagccttgactaaattattatctcatgcactcatca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctccctatactcctgaacataaggaagccttgactaaattattatctcatgcactcatca 471
Query: 339 ctgtaatattcatgtccactttaatgctcagtggagtatgctttatcttcgcaatgtcaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctgtaatattcatgtccactttaatgctcagtggagtatgctttatcttcgcaatgtcaa 411
Query: 399 taagagtaaaaaatgtgatgtggaatatcaatgcaagttcatgacaagctttctccctgt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taagagtaaaaaatgtgatgtggaatatcaatgcaagttcatgacaagctttctccctgt 351
Query: 459 cttaggaatttattgctgtgaagagacaccatgaccatggcaactcttatacaggacagc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cttaggaatttattgctgtgaagagacaccatgaccatggcaactcttatacaggacagc 291
Query: 519 atttca 524
||||||
Sbjct: 290 atttca 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_b09.g1 MSMg01no439_b09.g1 CHROMAT_FILE:
MSMg01no439_b09.g1 PHD_FILE: MSMg01no439_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:06 2005
(338 letters)
>mm_chr16_28862174_28862911
Length = 738
Score = 576 bits (298), Expect = e-169
Identities = 328/342 (95%), Gaps = 8/342 (2%)
Strand = Plus / Plus
Query: 1 cattctctcttaatgacttcctgagaggcgtccagcctgcttcaggagagtgagcctaac 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 201 cattctctcttaatgacttcctgagaggtgtccagcctgcttcaggagagtgagtctaac 260
Query: 61 tggaaagctattgcgacatcacaggatctcttcccaaggctggatagaaatcctcactgg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaagctattgcgacgtcacaggatctcttcccaaggctggatagaaatcctcactgg 320
Query: 121 ccgtgggcacagctgcttcctagcacgggtatgggtttttaagaccaaaacttgtatctg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggcacagctgcttcctagcacgggtatgggtttttaagaccaaaacttgtatctg 380
Query: 181 attgtgcggtcttcaaaaggtttctttaaaacacacatctgcaaatctgacctccacttt 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtgtggtcttcaaaaggtttctttaaaacacacatctgcaaatctgacctccacttt 440
Query: 241 atatttt----agccactcacacctcagctttccatgtcactgcacagattccaaaatta 296
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aga----gagaagccactcacacctcagctttccatgtcactgcacagattccaaaatta 496
Query: 297 aatggggacaatctgacgtgatgctgcaaaacatggcagctg 338
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aatggggacaatctgacgtgatgctgcaaaacatggcagctg 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
