BAC Information

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BAC

Clone NameMSMg01-439O06
Chromosome16 (Build37)
Map Location 97,831,687 - 97,831,981
singlet/doubletsinglet
Overlap geneTmprss2
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439O06.T7 (MSMg01no439_o06.b1)MSMg01-439O06.TJ (MSMg01no439_o06.g1)
ACCAG530136AG530137
length740755
length of high quality
(start - end)
467 (69 - 535)296 (74 - 369)
definitionCHROMAT_FILE: MSMg01no439_o06.b1 PHD_FILE: MSMg01no439_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:08 2005CHROMAT_FILE: MSMg01no439_o06.g1 PHD_FILE: MSMg01no439_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGAATTCCCAGTGGCATCTGGAGCATAGAAAACCTGCCACCTACCT
ACAACCAGCCCAAGTGGGCCACTGTGAAGTGTAGTACTGCTCTGAGGTGC
TAATGTCTCCTACCCCAGAAATAAAATGATAAGTATGGTAGCAGTGTATC
TCAGTGACCCTGTGCAATGTTCACCAGCAACCTTGTACAATACGGTCTAG
TGACCCTGTCCACCACTCACCAACAACCCTGTACAGTACTGCCTAGTGAC
CCTGTGCAACACTTTTATTTAACCCTACACACTACTGCCTAGTGACCCTG
TGCAACACTCAGAAGCAACCCTACACACTACTGCCTAGTGACCCTGTGCA
GGGTTCCTCAGTAACCTTGTGTAGGATTCCCCAGTGACTCAGAACACTAC
TCACTAGTGACCCTGCGCAGCATGTTCACAGCAGACTCTTCCAGGGCTTT
GACTCGCTTTTTGATGATGCTCTCAAATGCCTTGTAGTCCACAAACCCTG
GCAGCTCCCGGCCACGATACTGATTTTCAAATTCTTTTCTCTTGCTTTGT
ACCTCACGAGAAACTTTTGTTGGAAATATTGCCCTTGCTAAATACTTTTA
TAATATAACCCCTCACTTTCGTTCTTTTTGAAATTATGATCCCCGCGTCC
CCATATTCATTGTATATATTGCCGATTTGTCCCTCCCATC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGAATGGGCCTTGGAGGAGCTGGT
CCTGGGGCAGCAGGCCGGGCTGCCAAGGGCGAGCTGTCTACTGGGAAAAA
GGGTGACCACCTGGGCATTTAATTGGGACTTGGGGCAGTGGCAGGGTGAC
CCAACGTACTAGGCTGGCAGAGGACGCGGTGTGCGAGTCCAGTTGAAGAG
ATTAACTGTCCCATGGTCTGAAAGTTTTGTGTGTCCATGCCCCAGAGGAT
GTGGGTGGCTTGTGTTTTGTTCTTTTGGTTGCTAGGAGCCCAGGTACCTT
CACAATGTTCCCTAATTCAGTTCAGAGCATGCAAAGGACTCTAGTAGCTC
ATTTAAGGGAGAAGAACCCCTCAACTGTACTATGATAGCTGGTATCCCTA
TCCGGCCGCCCTTGCCCACCTTCTACGCACATGCTTACCCCATCTCCGCC
TCCAATATAACCTCTTTATAGTTGCTTCCTTCCACACTTCCTTTTTTCCA
CTCTCCCCTTTGCTCCCCCTTTCCTTTTCTTTTTTCCCTCCCTATTCGTC
CCTCCCCCTTCCTTCTCGTTTCCCTCTTTTTTCTCTCCCCTTTTCTCCCC
TTCTTTTTTCTTTTCCCCTTTTCCTTTTCCTCTCTCCTTTTCCTTTCCCT
TTTTATCTCCTCCCACTATCTCTTTCTCTACTTCTCCCTTTCTTCTACAC
TTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_o06.g1 MSMg01no439_o06.g1 CHROMAT_FILE:
MSMg01no439_o06.g1 PHD_FILE: MSMg01no439_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:08 2005
         (296 letters)



>mm_chr16_97831487_97832181
          Length = 695

 Score =  520 bits (269), Expect = e-152
 Identities = 289/299 (96%), Gaps = 7/299 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggaatgggccttggaggagctggtcctggggcagcaggccgggctgccaagggcgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actggaatgggccttggaggagctggtcctggggcagcaggccgggctgccaagggcgag 436

                                                                       
Query: 61  ctgtctactgggaaaaagggtgaccacctgggcatttaattgggacttggggcagtggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctgtctactgggaaaaagggtgaccacctgggcatttaattgggacttggggcagtggca 376

                                                                       
Query: 121 gggtgacccaacgtactaggctggcagaggacgcggtgtgcgagtccagttgaagagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gggtgacccaacgtactaggctggcagaggacgcggtgtgcgagtccagttgaagagatt 316

                                                                       
Query: 181 aactgtcccatggtctgaaagttttgtgtgtccatgccccagaggatgtgggtggcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aactgtcccatggtctgaaagttttgtgtgtccatgccccagaggatgtgggtggcttgt 256

                                                                      
Query: 241 gttttgtt---cttttggttgctaggagcccaggtaccttcacaatgttccctaattca 296
           |    | |   ||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 255 g----gctgggcttttggttgctaggagcccaggtaccttcacaatggcccctaattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)