BAC Information

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BAC

Clone NameMSMg01-440A05
Chromosome16 (Build37)
Map Location 92,631,861 - 92,632,350
singlet/doubletsinglet
Overlap geneRunx1
Upstream geneGart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440A05.T7 (MSMg01no440_a05.b1)MSMg01-440A05.TJ (MSMg01no440_a05.g1)
ACCAG530230AG530231
length1,190755
length of high quality
(start - end)
---479 (81 - 559)
definitionCHROMAT_FILE: MSMg01no440_a05.b1 PHD_FILE: MSMg01no440_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:17 2005CHROMAT_FILE: MSMg01no440_a05.g1 PHD_FILE: MSMg01no440_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGTACTTATCTCACTCACCACNCCGATANNCATATNATATCAATGNGC
CTCCGCTCTTACTTCTCCATATCGTGTAGCGTATCGCGGTCGACTNCATA
ATTATACCATCAGCCATTAGCTCGAATTCTATTTTCTCTATATTCCTCCT
TTTCCGGTCGATACAATATNTACCAACCATAAAATATCACTTTTCACAGA
TATACCCTCATTCTTATAACGTATATAATCATCCTAAAACTACACACATT
TACACACTCACATCACAATACCCTCCTATACAAATAATATTCTACCTTTT
CATATACACTTCCACACAATCTTTATGATACTTTTATATAATATATATAT
AACTAATTTATCATTTATCTATTTTTATATCCTTTCTCTCTCTCTCTCTT
CCTTCTTTTTCTCGCATCTCCTCTATCTATTATACACTCACCTCTCCTCC
TCTTTCCCCTATTATTCCTATCCCCCTCTCATACTCATTCATAATACTAC
CTATACCATAGATAAATCATAATACTATACCCTTGTAACAAATACACCTA
TCACTACTTTAATCCTCATAATTCAATCACACTATCACATAAAAATCTCA
TCAACTATCCTCTCAACAATCACTCTACTACTCTATACATATAAATATAT
ATTTATCTCATACACATCCCTATCTCTCTTTTCTCACCATACCAATCTAC
ATACCTATACATCCTATTTCTATACACAATTTTTCTTCCTCTCTATAAAC
AATATTACTAATCCCTTATCCTATCTATCACCCACTCTTTCACTCTTTCT
ATCCTCTAACTACATTCAATACAAATCATAAATATCATCCTAATAAATAT
CTTCTCACACTTTTATAACAATCCTCATCACAACCATTTCTAACTCACCT
ACACACCATATATATTAACTCATTCTCACAACTCATTTCTACACACTGTC
ACTAAACTTTACAAACTCCCATACCTCACCTCCTATTTCTACTCTCTCTC
CTTCTAACACAATAATTTAAACCAATATTTATACAACATTTATTAACAAT
ATACTTAACTCAANTCACATATAAACCATCACTATCTCTACTCTTTATCA
TAGACTACATATCATTTTATAAACCATTTTACATATCTACTTTCATTCAT
TCTCTTTCATTAATATTAACAATCTATTTCTTTACTGTTG
AAACCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGTCGCGAATTCAGAGTCAGGGCCTTGAA
TGGCTAGATCAGAGACTGTTTTGGAATTTGTAAGATTAGCCACCACTTTC
TCCCCCCCCTCCCGCCCCCTCCCAAGCTACCAGGGAACAGGATCCTGCAT
ATCTGGTGGCTTCTGGCTCCCTTCCTTAACTGAGAGACAGAGGACTCCAG
CATACTGGCTCTTAAGTGATATTTACTTAATAGTTAACTGGGTTTCAAAA
GAGAATGGGGACTTGACTCCCTTCACTAATTAGCCCTGCCGGCTGGCTTG
TCATCTCCACCTTCACCACCCACGGAGTGTGCTCTTGACAAGTCATGACC
CGAACTCCCAGGGGACTTGCACTCTGGGCTTGCCTCCTCCACTGTCTGAG
AAACACAAGTCTCTAAAGAAGATAAGGCTAGAGCAATGAAGGGCATTCTG
GGAAAATGTAAAGGACCCCCCTCCAGATCCCAGAGGAGCAATGGCAGCCT
GGAGGGGAAAGTGACTTGCCACAGGTGGCATACACTGTTATCCAAGTGCT
TGGGTGTCTTCTCCGGTTCGGGCGCTGGAAACATTCCTGGAATTTGCACT
GGAATTCGGCCTGATGAGACCCTTACCTAACTTCTTTTAAGCAATCGAAG
GGTTCGTGGGGACTATAATTTTCATTACCTTTTTGTGACTTGGATCTTTT
GTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_a05.g1 MSMg01no440_a05.g1 CHROMAT_FILE:
MSMg01no440_a05.g1 PHD_FILE: MSMg01no440_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:17 2005
         (479 letters)



>mm_chr16_92631661_92632550
          Length = 890

 Score =  862 bits (446), Expect = 0.0
 Identities = 475/490 (96%), Gaps = 11/490 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagagtcagggccttgaatggctagatcagagactgttttggaatttgtaagattagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttcagagtcagggccttgaatggctagatcagagactgttttggaatttgtaagattagc 631

                                                                       
Query: 61  caccactttct---cccccccctcccgccccctcccaagctaccagggaacaggatcctg 117
           |||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 630 caccactttcttccccccccccccccgccccctcccaagctaccagggaacaggatcctg 571

                                                                       
Query: 118 catatctggtggcttctggctcccttccttaactgagagacagaggactccagcatactg 177
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 570 catagctggtggcttctggctcccttccttaactgagagacagaggactccagcatcctg 511

                                                                       
Query: 178 gctcttaagtgatatttacttaatagttaactgggtttcaaaagagaatggggacttgac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gctcttaagtgatatttacttaatagttaactgggtttcaaaagagaatggggacttgac 451

                                                                       
Query: 238 tcccttcactaattagccctgccggctggcttgtcatctccaccttcaccacccacggag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcccttcactaattagccctgccggctggcttgtcatctccaccttcaccacccacggag 391

                                                                       
Query: 298 tgtgctcttgacaagtcatgacccgaactcccaggggacttgcactctgggcttgcctcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgtgctcttgacaagtcatgacccgaactcccaggggacttgcactctgggcttgcctcc 331

                                                                       
Query: 358 tccactgtctgagaaacacaagtctctaaagaagataaggctagagcaatgaagggcatt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tccactgtctgagaaacacaagtctctaaagaagataaggctagagcaatgaagggcatt 271

                                                                       
Query: 418 ctgggaaaatgtaaagga------cccccctcc--agatcccagaggagcaatggcagcc 469
           ||||||||| ||||||||      |||||||||  |||||||||||||||||||||||||
Sbjct: 270 ctgggaaaacgtaaaggatcccgccccccctccccagatcccagaggagcaatggcagcc 211

                     
Query: 470 tggaggggaa 479
           ||||||||||
Sbjct: 210 tggaggggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 890
Length adjustment: 10
Effective length of query: 469
Effective length of database: 880
Effective search space:   412720
Effective search space used:   412720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)