Query= MSMg01no441_e03.b1 MSMg01no441_e03.b1 CHROMAT_FILE:
MSMg01no441_e03.b1 PHD_FILE: MSMg01no441_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:58 2005
(558 letters)
>mm_chr16_67162891_67163849
Length = 959
Score = 1004 bits (519), Expect = 0.0
Identities = 546/555 (98%), Gaps = 3/555 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtgaattgctacaggcagctgccaggtagagtggagacagagacaggatgttc 64
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 957 gaattctgtgaaatgctacaggcagctcccaggtagagtggagacagagacaggatgttc 898
Query: 65 ctttcggctctctagccaactagacaagcttagttcttgaattccgggcaaatgggagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ctttcggctctctagccaactagacaagcttagttcttgaattccgggcaaatgggagat 838
Query: 125 cctgtttcaaaagagtagacagtatttcagagaatgacacttaagattaccctctggctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cctgtttcaaaagagtagacagtatttcagagaatgacacttaagattaccctctggctt 778
Query: 185 ccacacacttgcatatacatgtgaaagtatacgtggatacacatgaataaacacaaacac 244
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 777 ccacacacttgcacatacatgtgaaagtatatgtggatacacatgaataaacacaaacac 718
Query: 245 acatgaatacaataaaatttaatctaagccatattcatataaatgatatcttaattgggt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acatgaatacaataaaatttaatctaagccatattcatataaatgatatcttaattgggc 658
Query: 305 taatttatgaggacaggaactcattgacatttgtatgagttctcagtgcaatggatacta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taatttatgaggacaggaactcattgacatttgtatgagttctcagtgcaatggatacta 598
Query: 365 ttgtacacagacgaatggctataatcctgtacaaatagtaaaatatttaaaagtaaacat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgtacacagacgaatggctataatcctgtacaaatagtaaaatatttaaaagtaaacat 538
Query: 425 acacaaaatgttgtagacacttttaaagtatatagcta-tgcatattaacacttaataag 483
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 537 acacaaaatgttgtagacacttttaaagtatatagc-actgcatattaacacttaataag 479
Query: 484 ttctaacatattgtgaaaatttaacattaaaatattgttcaag-ttttttttctcttttg 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 478 ttctaacatattgtgaaaatttaacattaaaatattgttcaagtttttttttctcttttg 419
Query: 543 tcttttggttttttg 557
||||||| |||||||
Sbjct: 418 tcttttgtttttttg 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_e03.g1 MSMg01no441_e03.g1 CHROMAT_FILE:
MSMg01no441_e03.g1 PHD_FILE: MSMg01no441_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:58 2005
(496 letters)
>mm_chr16_67095924_67096819
Length = 896
Score = 843 bits (436), Expect = 0.0
Identities = 483/500 (96%), Gaps = 5/500 (1%)
Strand = Plus / Plus
Query: 1 aacagaattttttttt---ccaatgtggacaaggacaagtaccagtgaaataagaactaa 57
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 198 aacagaattttttttttccccaatgtggacaaggacaagtaccagtgcaataagaactaa 257
Query: 58 ctgcacacataacctgggttcagtagtagctgacatgttatttttctttacgattcagag 117
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 258 gtacacacataacctgggttcagtagtagctgacatgttatttttctatacgattcagag 317
Query: 118 tttattttattttagctgtatgagtgctgttcctttatggatatgtgtgccatgtgtatg 177
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 318 tttattttattttagctgtatgagtgttgttcctttatggatatgtgtgccatgtgtagg 377
Query: 178 catggtacctgcagaaggctgaggagggctactcatctcgaggaactccaactatacaca 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 catggtgcctgcagaaggctgaggagggctactcatctcgaggaactccaactatacaca 437
Query: 238 gtcatgatttggcaagtgaaggctggtagcagaaactggactctctgccagagcagcaag 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtcatgttttggcaagtgaaggctggtagcagaaactggactctctgccagagcagcaag 497
Query: 298 tgctcttcactgccgagtcatccttctaggttcaggacacaaaatttaaatattctgtgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgctcttcactgccgagtcatccttctaggttcaggacacaaaatttaaatattctgtgt 557
Query: 358 agtgttgacaccatctaagatttctccacccattttggaacact-ttgaggcggggaaac 416
||||||||||||| |||||||||||||||| | ||||||||| | |||||||||||||||
Sbjct: 558 agtgttgacaccacctaagatttctccacctactttggaaca-tgttgaggcggggaaac 616
Query: 417 catctttcctagggagaaatatacatgctgattatccatcatcaaaccatcagtcgtgaa 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catctttcctagggagaaacatacatgctgattatccatcatcaaaccatcagtcgtgaa 676
Query: 477 aacacatggaaaagaaaccg 496
||||||||||||||||||||
Sbjct: 677 aacacatggaaaagaaaccg 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
